View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8786_high_5 (Length: 246)
Name: NF8786_high_5
Description: NF8786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8786_high_5 |
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| [»] scaffold0019 (1 HSPs) |
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| [»] chr6 (8 HSPs) |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 8344 - 8576
Alignment:
| Q |
14 |
ggacatcactgtatccgagttataaccaattagagtatcgcatgatttagaagtgtattgtgggagtgaaaagggaataaaactttaccgttccctttgt |
113 |
Q |
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| T |
8344 |
ggacatcactgtatccgagttataaccaattagagtatcgcatgatttagaagtgtattgtgggagtgaaaagggaataaaactttaccgttccctttgt |
8443 |
T |
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| Q |
114 |
tttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatactt |
213 |
Q |
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| T |
8444 |
ttttgaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatactt |
8543 |
T |
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| Q |
214 |
atgttcctcagtgttggttttgatgcattacct |
246 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
8544 |
atgttccttagtgttggttttgatgcattacct |
8576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 98 - 246
Target Start/End: Complemental strand, 11663569 - 11663421
Alignment:
| Q |
98 |
ttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatg |
197 |
Q |
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|||| ||||||||||| ||| ||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
11663569 |
ttacagttccctttgtatttggaacttctccgagaattgttgctaagagggttgattttcctgagccaacttctccacagatagccaccttttgcccacg |
11663470 |
T |
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| Q |
198 |
tctaacctccatacttatgttcctcagtgttggttttgatgcattacct |
246 |
Q |
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| T |
11663469 |
tctaacgtccaaatttatgtttcttagtgttggatttgatgccttacct |
11663421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 89 - 246
Target Start/End: Original strand, 11710015 - 11710172
Alignment:
| Q |
89 |
aataaaactttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccacctt |
188 |
Q |
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||||||| |||| ||||||||||| || ||| ||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11710015 |
aataaaagcttacagttccctttgtattaggaacctctccaagaattgttgctaataccgttgattttcctgagccaacttctccacaaatagccacctt |
11710114 |
T |
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| Q |
189 |
ttgcccatgtctaacctccatacttatgttcctcagtgttggttttgatgcattacct |
246 |
Q |
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| T |
11710115 |
ttgcccacgtctaacatccaagtttatgtttcttagtgttggctttgatgcattacct |
11710172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 98 - 236
Target Start/End: Complemental strand, 11618753 - 11618615
Alignment:
| Q |
98 |
ttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatg |
197 |
Q |
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| T |
11618753 |
ttacagttccctttgttttagaaacttctccaagaattgttgctaagatggttgattttccggaaccaacttctccacaaatggccaccttttgcccatg |
11618654 |
T |
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| Q |
198 |
tctaacctccatacttatgttcctcagtgttggttttga |
236 |
Q |
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| T |
11618653 |
tctaacatctaaatttatgttccttagtgatggctttga |
11618615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 120 - 246
Target Start/End: Original strand, 11631501 - 11631627
Alignment:
| Q |
120 |
aacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatacttatgttc |
219 |
Q |
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| T |
11631501 |
aacttctccaagaattgttgctaagagggttgatttgccggagccaacttctccacagatagccactttttggccgtgcttaacctctaaatttatgttc |
11631600 |
T |
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| Q |
220 |
ctcagtgttggttttgatgcattacct |
246 |
Q |
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| T |
11631601 |
cgcagggttggctttgatgcattacct |
11631627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 123 - 244
Target Start/End: Original strand, 11673525 - 11673646
Alignment:
| Q |
123 |
ttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatacttatgttcctc |
222 |
Q |
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| T |
11673525 |
ttctccaagaattgttgctaagatggttgattttcctgagccaacttcgccacaaatagccaccctttgtccatgtttaacgtccaaatttatgcttctt |
11673624 |
T |
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| Q |
223 |
agtgttggttttgatgcattac |
244 |
Q |
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| T |
11673625 |
agtgttggctttattgcattac |
11673646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 12093565 - 12093638
Alignment:
| Q |
121 |
acttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgccc |
194 |
Q |
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| T |
12093565 |
acttctccgagaattgctgctaataaagttgattttcctgagccaacttctccacaaatagctatcttttgccc |
12093638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 11756370 - 11756309
Alignment:
| Q |
121 |
acttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagc |
182 |
Q |
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| T |
11756370 |
acttctccgagaattgctgctaataaagttgattttcctgagccaacttctccacaaatagc |
11756309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 11739337 - 11739395
Alignment:
| Q |
121 |
acttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaat |
179 |
Q |
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| T |
11739337 |
acttctccgagaatcgctgctaagagagttgatttacctgagccaacttctccacaaat |
11739395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 242
Target Start/End: Complemental strand, 13127 - 12961
Alignment:
| Q |
76 |
ggagtgaaaagggaataaaactttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccac |
175 |
Q |
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||||| |||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| | || |||||||| || |||||||||| ||| | |
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| T |
13127 |
ggagtcaaaagggaataaaaacttacaattccctttgttttaggaacttctccaagaattgttgctaaaagggttgatttgccagagccaacttttccgc |
13028 |
T |
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| Q |
176 |
aaatagccaccttttgcccatgtctaacctccatacttatgttcctcagtgttggttttgatgcatt |
242 |
Q |
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| |||||||||||||| |||||||||||||| | | |||| |||||| |||||| ||| ||||||| |
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| T |
13027 |
agatagccaccttttggccatgtctaacctcaaaatttatactcctcaatgttggctttaatgcatt |
12961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 31291038 - 31291126
Alignment:
| Q |
98 |
ttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccacc |
186 |
Q |
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|||| ||| |||| ||||| |||||||||||||||||||||| | || |||||||||||||||||||||||||||||||| |||||| |
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| T |
31291038 |
ttacagttaccttagttttataaacttctccaagaattgttgttaatagtgttgattttcctgagccaacttctccacaaatggccacc |
31291126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 27957851 - 27957923
Alignment:
| Q |
107 |
cctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaat |
179 |
Q |
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|||||||||| ||||||||||||||||||||||| | || ||| ||||||||||| |||||||||||||||| |
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| T |
27957851 |
cctttgttttataaacttctccaagaattgttgctaatagcgttaattttcctgagacaacttctccacaaat |
27957923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 44812126 - 44812055
Alignment:
| Q |
120 |
aacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttg |
191 |
Q |
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||||||||||||||||| || | ||||| |||||| ||||||||||||||||||||||| || |||||||| |
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| T |
44812126 |
aacttctccaagaattgctgataagagagatgatttgcctgagccaacttctccacaaatcgcgaccttttg |
44812055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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