View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8786_low_11 (Length: 222)
Name: NF8786_low_11
Description: NF8786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8786_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 5765246 - 5765026
Alignment:
| Q |
1 |
ttgcagggtaactgaaataaacatctttaagttcaatatctccctttatgtctttcaagacaataccacttgtgtcatatgcatcaattttaggctttct |
100 |
Q |
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| T |
5765246 |
ttgcagggtaactgaaataaacatctttaagttcaatatctccatttatgtctttcaagacagtaccacttgtgtcatatgcatcaattttaggctttct |
5765147 |
T |
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| Q |
101 |
tttaattgtctcgaacattttatatgctgctgcttggcctgcagcaaatgcatctaagcatggtgatgtctcacccaatgacctgtaaaagaatgaaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5765146 |
tttaattgtctcgaacattttatatgctgctgcttggcctgcagcaaatgcatctaagcatggtgatgtctgacccaatgacctgtaaaagaatgaaatt |
5765047 |
T |
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| Q |
201 |
atatattttcatcaaaggtcc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
5765046 |
atatattttcatcaaaggtcc |
5765026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 5832584 - 5832752
Alignment:
| Q |
1 |
ttgcagggtaactgaaataaacatctttaagttcaatatctccctttatgtctttcaagacaataccacttgtgtcatatgcatcaattttaggctttct |
100 |
Q |
| |
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| T |
5832584 |
ttgcagggtatctgaaggaaacatctctgagttcaatatctccctttatgtcttccaagacagcaccactggtgtcacttgcatcaatgatgggctttct |
5832683 |
T |
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| Q |
101 |
tttaattgtctcgaacattttatatgctgctgcttggcctgcagcaaatgcatctaagcatggtgatgt |
169 |
Q |
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| T |
5832684 |
tctaattgtctcaaacattttatatgctgctgcttggcctgcagcaaatgcttgtaagcttggggatgt |
5832752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 5822904 - 5822740
Alignment:
| Q |
1 |
ttgcagggtaactgaaataaacatctttaagttcaatatctccctttatgtctttcaagacaataccacttgtgtcatatgcatcaattttaggctttct |
100 |
Q |
| |
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|||||||||| || || ||||||||||| |||||||| ||||||||||||| | || | || ||||||||||||||| |||||||| || || ||||| |
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| T |
5822904 |
ttgcagggtatctaaagtaaacatctttgagttcaatgtctccctttatgttctccattataacaccacttgtgtcataagcatcaatgttcggttttct |
5822805 |
T |
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| Q |
101 |
tttaattgtctcgaacattttatatgctgctgcttggcctgcagcaaatgcatctaagcatggtg |
165 |
Q |
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| T |
5822804 |
tttaattgtctcgaacatcttacatgctgctacttggcctgttgcaaatgcatttatgcatggtg |
5822740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 29330108 - 29330293
Alignment:
| Q |
1 |
ttgcagggtaactgaaataaacatctttaagttcaatatctccctttatgtctttcaagacaataccacttgtgtcatatgcatcaattttaggctttct |
100 |
Q |
| |
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|||||||||| ||||| | ||||||| | |||||||||||||||||||| |||| ||| |||| |||||| || ||||||||||| ||||| |||||||| |
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| T |
29330108 |
ttgcagggtatctgaagtgaacatctctgagttcaatatctccctttatatcttccaacacaagaccactggtatcatatgcatcgatttttggctttct |
29330207 |
T |
|
| Q |
101 |
tttaattgtctcgaacattttatatgctgctgcttggcctgcagcaaatgcatctaagcatggtgatgtctcacccaatgacctgt |
186 |
Q |
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| T |
29330208 |
tttaatcgtctcaaacattttatatgctgctgctttgcctgcagcaaatgcatgtaagcttggggatgtctgacctaatgacctgt |
29330293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 51199340 - 51199262
Alignment:
| Q |
70 |
ttgtgtcatatgcatcaattttaggctttcttttaattgtctcgaacattttatatgctgctgcttggcctgcagcaaa |
148 |
Q |
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||||||| || |||||||||| ||||| |||||||| || |||||||||||| |||| || ||||| ||||||||||| |
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| T |
51199340 |
ttgtgtcgtaagcatcaatttcgggcttccttttaatcgtttcgaacattttaaatgccgcagcttgtcctgcagcaaa |
51199262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 51145355 - 51145273
Alignment:
| Q |
66 |
ccacttgtgtcatatgcatcaattttaggctttcttttaattgtctcgaacattttatatgctgctgcttggcctgcagcaaa |
148 |
Q |
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| T |
51145355 |
ccactagtgtcataggcatcaatttccggcttcctattaatcgtttcgaacatcttaaaggctgcagcttgtcctgcagcaaa |
51145273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 51156496 - 51156414
Alignment:
| Q |
66 |
ccacttgtgtcatatgcatcaattttaggctttcttttaattgtctcgaacattttatatgctgctgcttggcctgcagcaaa |
148 |
Q |
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||||| |||||||| |||||||||| ||| | |||||||| || |||||||| ||| | ||||| ||||| ||||||||||| |
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| T |
51156496 |
ccactagtgtcataagcatcaatttccggcatccttttaatcgtttcgaacatcttaaaggctgcagcttgtcctgcagcaaa |
51156414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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