View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8786_low_2 (Length: 460)
Name: NF8786_low_2
Description: NF8786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8786_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 34955685 - 34955943
Alignment:
| Q |
1 |
aagcttaggtgacaatttctttccaaaagataaatggtgtatggcatgcgacatgttcatttgagaagcatcaaatgaatgggcatcggatcttgctgag |
100 |
Q |
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| T |
34955685 |
aagcttaggtgacaatttctttccaaaagataaatggtgtacggcatgcgacatgttcatttgagaagcatcaaatgaatgggcatcggatcttgctgag |
34955784 |
T |
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| Q |
101 |
atgatcaagtttcctggaacctgcagagtgcaaaacagcttacgtttcggcataatatttaaaatac--agagaaaaataataggaagtcatatgccgta |
198 |
Q |
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| T |
34955785 |
atgatcaagtttcctggaacctgcagagtgcaaaacagcttatgtttcggcataatatttaaaatacagagagaaaaataataggaagtcatatgccgta |
34955884 |
T |
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| Q |
199 |
tattatatcatttatttctgctgttataatattgacaactgaagcttctattataatgc |
257 |
Q |
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| T |
34955885 |
tattatatcatttatttctgctgttataatattgacaactgaagcttctattataatgc |
34955943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 293 - 460
Target Start/End: Original strand, 34955979 - 34956146
Alignment:
| Q |
293 |
tcttggttcatactcacacctgaaaactaggaagcaacaaaagaagttttccacattacactagaattagaaggtaaattttatccgtatgcgagtttac |
392 |
Q |
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| T |
34955979 |
tcttggttcatactcacacctgaaaactaggaagcaacaaaagaagttttccacattacactagaattagaaggtaaattttatccgtatgcgagtttac |
34956078 |
T |
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| Q |
393 |
cttcttgacacgtacatatccttcaattctacatcccccggatgacggtgctggtctttttgaatcct |
460 |
Q |
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| T |
34956079 |
cttcttgacacgtacatatccttcaattctacatcccccggatgacggtgctggtctttttgaatcct |
34956146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 31391785 - 31391666
Alignment:
| Q |
6 |
taggtgacaatttctttccaaaagataaatggtgtatggcatgcgacatgttcatttgagaagcatcaaatgaatgggcatcggatcttgctgagatgat |
105 |
Q |
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|||||| || ||| ||||||||||||| ||||| ||| |||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||| | |
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| T |
31391785 |
taggtgtcactttttttccaaaagatagatggttgatgacatgtgacatgttcatttgagaagcatcaaatgaatgtgcatctgatctagctgagacaac |
31391686 |
T |
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| Q |
106 |
caagtttcctggaacctgca |
125 |
Q |
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| T |
31391685 |
caagcttcctggaacctgca |
31391666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 454
Target Start/End: Complemental strand, 31391327 - 31391257
Alignment:
| Q |
384 |
cgagtttaccttcttgacacgtacatatccttcaattctacatcccccggatgacggtgctggtctttttg |
454 |
Q |
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| T |
31391327 |
cgagtttacctttttcacacgcacatatccctcaactctacatccaccggttgacggtgctggtctttttg |
31391257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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