View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8786_low_8 (Length: 243)
Name: NF8786_low_8
Description: NF8786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8786_low_8 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0196 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0019 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 8635 - 8869
Alignment:
| Q |
1 |
attttttcttgaaattttctctctgcagttccggtgcctcaaggaaattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaataacatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8635 |
attttttcttgaaattttctctctgcagttccggtgcctcaaggaaattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaataacatc |
8734 |
T |
|
| Q |
101 |
tgggatgcttgaaattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgctaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8735 |
tgggatgcttgaaattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgctaga |
8834 |
T |
|
| Q |
201 |
aaagaagcagcagataccaacaatggtgatgtcca |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
8835 |
aaagaagcagcagataccaacaatggtgatgtcca |
8869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 11631691 - 11631907
Alignment:
| Q |
6 |
ttcttgaaattttctctctgcagttccggtgcctcaaggaaattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaataacatctggga |
105 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||| ||||||||| ||||||| |||| || ||||||||||||| ||||||||| ||||| |||||||| | |
|
|
| T |
11631691 |
ttcttcaaattttcactctgcagttctggtgcatcaaggaaagtaacaattcgagcaaatgcaacttttgcctgaatgatcaccgcaatgacatctggaa |
11631790 |
T |
|
| Q |
106 |
tgcttgaaattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgctagaaaaga |
205 |
Q |
| |
|
| |||| |||||| ||||||| || |||| ||||||||||| ||||||||||||||||||||| ||||||| | || || ||||||||||||||||| |
|
|
| T |
11631791 |
tacttgtaattggctcttgaacaaggcgcacagttgccacaaaagtgaaaacattacttgcatgtaaaggaatatccaagaagtaacatgctagaaaaga |
11631890 |
T |
|
| Q |
206 |
agcagcagataccaaca |
222 |
Q |
| |
|
||||| ||| ||||||| |
|
|
| T |
11631891 |
agcagtagacaccaaca |
11631907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 12 - 177
Target Start/End: Complemental strand, 11618535 - 11618370
Alignment:
| Q |
12 |
aaattttctctctgcagttccggtgcctcaaggaaattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaataacatctgggatgcttg |
111 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||| || |||||||| |||| ||||||| |||||||||| ||||||||| ||| |
|
|
| T |
11618535 |
aaattttcactctgcagttctggtgcctcaaggaaattaacaatccgagcaaatgcaactttcgcctgaatgatcgctgcaataacttctgggatgtttg |
11618436 |
T |
|
| Q |
112 |
aaattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaa |
177 |
Q |
| |
|
|||||| ||||||| || ||||||||||| || | ||||||||||||||||||| || ||||| |
|
|
| T |
11618435 |
caattggatcttgaacaaggcgcaaagttgcgaccaatgtgaaaacattacttgcattcagaggaa |
11618370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 11663357 - 11663141
Alignment:
| Q |
6 |
ttcttgaaattttctctctgcagttccggtgcctcaaggaaattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaataacatctggga |
105 |
Q |
| |
|
||||| |||||||| ||||||||||| || |||||||| ||||| ||||||||| || || ||||| || | ||| ||||| |||| ||||||||||| |
|
|
| T |
11663357 |
ttcttcaaattttcactctgcagttctggagcctcaagaaaattttgaatccgagaaaatgcgactttggcttgaataatcacagcaacaacatctggga |
11663258 |
T |
|
| Q |
106 |
t-gcttgaaattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgctagaaaag |
204 |
Q |
| |
|
| ||| ||| |||| ||||||| || || |||||||| || | |||||||||||| |||||| |||||||||||||||| || |||||||||| ||||| |
|
|
| T |
11663257 |
ttgctagaa-ttggctcttgaacaaggcgtaaagttgctacgaaagtgaaaacattgcttgcacgcaaaggaactttcaggaagtaacatgctataaaag |
11663159 |
T |
|
| Q |
205 |
aagcagcagataccaaca |
222 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
11663158 |
aagcagcagataccaaca |
11663141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 11710239 - 11710452
Alignment:
| Q |
9 |
ttgaaattttctctctgcagttccggtgcctcaaggaaattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaataacatctgggatgc |
108 |
Q |
| |
|
|||||| |||| |||| ||||| |||||||||||||||||| ||||||| || ||||||||||| | ||||||||| | ||||||||| || || | |
|
|
| T |
11710239 |
ttgaaactttcactctttagttctggtgcctcaaggaaattacatatccgagcaaatgcaacttttgcttgaatgatcaccgtaataacatccggtatac |
11710338 |
T |
|
| Q |
109 |
ttgaaattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgctagaaaagaagc |
208 |
Q |
| |
|
|| |||||| |||||| || | || |||||||||| ||||||||||||||||||||||||||||| ||| || || |||||||||||||||||||| |
|
|
| T |
11710339 |
ctgtaattggcacttgaacaaggcctaatgttgccacaaaagtgaaaacattacttgcatgcaaaggaattttaaggaagtaacatgctagaaaagaagc |
11710438 |
T |
|
| Q |
209 |
agcagataccaaca |
222 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
11710439 |
agcagacaccaaca |
11710452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 11673712 - 11673928
Alignment:
| Q |
6 |
ttcttgaaattttctctctgcagttccggtgcctcaaggaaattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaataacatctggga |
105 |
Q |
| |
|
||||| |||||||| || |||||||| |||| | || ||||||||||||| || || ||||||||||| | ||| ||||| |||||||||||||| | |
|
|
| T |
11673712 |
ttcttaaaattttcactttgcagttcttgtgcttggagaaaattaacaatcctagcaaatgcaacttttgcttgaataatcaccgcaataacatctggaa |
11673811 |
T |
|
| Q |
106 |
tgcttgaaattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgctagaaaaga |
205 |
Q |
| |
|
| | || ||| || ||||||| || || || |||||||||| ||||||||||||||||||||||||||||||||||| || ||||| | |||||||| |
|
|
| T |
11673812 |
tacctgtaataggatcttgaacaaggcgtaatgttgccacaaaagtgaaaacattacttgcatgcaaaggaactttcaagaagtaacagaccagaaaaga |
11673911 |
T |
|
| Q |
206 |
agcagcagataccaaca |
222 |
Q |
| |
|
||| | ||| ||||||| |
|
|
| T |
11673912 |
agccgaagacaccaaca |
11673928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 11739553 - 11739716
Alignment:
| Q |
33 |
ggtgcctcaaggaaattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaataacatctgggatgcttgaaattggttcttgaatgagac |
132 |
Q |
| |
|
|||||||| ||||| | ||||||||||| || |||| ||||| | |||||||||| |||||||||| |||||| |||||||||| ||||| || || | |
|
|
| T |
11739553 |
ggtgcctcgaggaattccacaatccgagaaaatgcaatatttgcttgaatgatcactccaataacatcagggatggttgaaattggatcttgcataagtc |
11739652 |
T |
|
| Q |
133 |
gcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgc |
196 |
Q |
| |
|
| | |||||||||| ||||| | |||| | ||||| |||||||| |||| || |||||||| |
|
|
| T |
11739653 |
gtattgttgccacaaaggtgaatatattattcgcatgtaaaggaacattcaagaagtaacatgc |
11739716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 220
Target Start/End: Complemental strand, 44811915 - 44811728
Alignment:
| Q |
33 |
ggtgcctcaaggaaattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaataacatctgggatgcttgaaattggttcttgaatgagac |
132 |
Q |
| |
|
|||||||||||||| || | |||||||| ||||||||||||||||| ||| | ||| ||||||| ||||||||| | ||| || ||||||| || | |
|
|
| T |
44811915 |
ggtgcctcaaggaattttagaatccgagcgaacgcaacttttgcctgaataaccaccccaataacgtctgggatggatctaatcggatcttgaacaaggc |
44811816 |
T |
|
| Q |
133 |
gcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgctagaaaagaagcagcagataccaa |
220 |
Q |
| |
|
| |||||||| |||| ||||||||||||| |||||||||||||||| || |||||||| |||||| ||| ||||||||||| ||||| |
|
|
| T |
44811815 |
gtaaagttgctacaaaagtgaaaacattatttgcatgcaaaggaacgttaagaaaatagcatgctccaaacgaagcagcagagaccaa |
44811728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 219
Target Start/End: Complemental strand, 12833 - 12680
Alignment:
| Q |
66 |
gcaacttttgcctcaatgatcactgcaataacatctgggatgcttgaaattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttg |
165 |
Q |
| |
|
|||||||| || | ||| ||| ||| ||||||||| || |||||||||||||| ||||||| || |||||||||||||| |||||||||||||||| |
|
|
| T |
12833 |
gcaactttagcttgaataatcgctgtaataacatccggaatgcttgaaattggatcttgaacaaggttcaaagttgccacaaatgtgaaaacattacttg |
12734 |
T |
|
| Q |
166 |
catgcaaaggaactttcagaaaataacatgctagaaaagaagcagcagatacca |
219 |
Q |
| |
|
||||||| ||||||| || || |||||||| | |||||| ||| ||||||||| |
|
|
| T |
12733 |
catgcaatggaacttccaagaagtaacatgccaaaaaagaggcaacagatacca |
12680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 38151448 - 38151541
Alignment:
| Q |
108 |
cttgaaattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgctagaa |
201 |
Q |
| |
|
|||| |||||| ||||||| || ||||||||||| |||| |||||||||||||||||||||||||||||| | || || ||||||||||||| |
|
|
| T |
38151448 |
cttgtaattggctcttgaacaaggcgcaaagttgcaacaaaagtgaaaacattacttgcatgcaaaggaacatccaagaagtaacatgctagaa |
38151541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University