View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8786_low_9 (Length: 242)
Name: NF8786_low_9
Description: NF8786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8786_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 3 - 234
Target Start/End: Original strand, 34956184 - 34956415
Alignment:
| Q |
3 |
atactctgaagggaaagacgccaatatattctccattgtctgcagcagagacacttcatatcaggcatgttgtactctaatggtaaacagtgatgttcaa |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34956184 |
atactctgaagggaaagacgccaatatattctccattgtctgcagcagagacacttcatatcaggcatgttgtactctaatggtaaacagtgatgttcaa |
34956283 |
T |
|
| Q |
103 |
ttatacttaaaagcataaacacttcaaagtaaaatgatacaaatcatgctaatttaaattaaatataatgtgtaccttaacaaggctatctgtatcacga |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34956284 |
ttatacttaaaagcataaacacttcaaagtaaaatgatacaaatcatgctaatttaaattaaatataatgtgtaccttaacaaggctatctgtatcacga |
34956383 |
T |
|
| Q |
203 |
tctccataataagactcatgctcatgatgtcc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
34956384 |
tctccataataagactcatgctcatgatgtcc |
34956415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 31391094 - 31391018
Alignment:
| Q |
158 |
aaattaaatataatgtgtaccttaacaaggctatctgtatcacgatctccataataagactcatgctcatgatgtccat |
236 |
Q |
| |
|
||||||||||| |||| ||||| || ||||| ||||||||||| ||||||||||| |||||||| ||||||||||||| |
|
|
| T |
31391094 |
aaattaaatat--tgtgaaccttgactaggctttctgtatcacggtctccataataggactcatgttcatgatgtccat |
31391018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University