View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8787_low_1 (Length: 446)
Name: NF8787_low_1
Description: NF8787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8787_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 177 - 424
Target Start/End: Complemental strand, 42037072 - 42036825
Alignment:
| Q |
177 |
cactccactcccgttggtcatggcttaggagaatcacttcttaaacgacaagcaagaatcaatgatgcatgttccttactcattcaatttggtttccatc |
276 |
Q |
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| T |
42037072 |
cactccactcccgttggtcatggcttaggagaatcacttcttaaacgacaagcaagaatcaatgatgcatgttccttactcattcaattcggtttccatc |
42036973 |
T |
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| Q |
277 |
aagggatttttaccatcaacaatcttcttagccaaggctacaccgacgatgactttctggagcttatcgagccaattacttccataacagatttggagga |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42036972 |
aagggatttttaccatcaacaatcttcttagccaaggctacaccgacgatgactttctggagcttatcaagccaattacttccataacagatttggagga |
42036873 |
T |
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| Q |
377 |
attaagatatctttacaacataacttgtcaatataaccattttccaca |
424 |
Q |
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| T |
42036872 |
attaagatatctttacaacataacttgtaaatataaccattttccaca |
42036825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 35588898 - 35589056
Alignment:
| Q |
18 |
tgtacaagtattaacagaaaaaccaaactaagaggaagctaaactaatgtataggaaagctaaactaattgataggaacaataaggattaggatgagaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35588898 |
tgtacaagtattaacagaaaaaccaaactaagaggaagctgaactaatgtataggaaagctaaactaattgataggaacaataaggattaggatgagaac |
35588997 |
T |
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| Q |
118 |
aacaaggatcagtagcaaattgtaactaattgtgagatattctagtttagtcgataaca |
176 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35588998 |
aacaaggaccagtagcaaattgtaactaattgtgagatattctagtttagtcgataaca |
35589056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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