View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8787_low_3 (Length: 265)
Name: NF8787_low_3
Description: NF8787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8787_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 7721932 - 7721682
Alignment:
| Q |
1 |
ataacaatacttttccaaggttcccagagaaattcacccaagagtctagaatgnnnnnnngagaagaaatgttatta-attacatgcattgatgcatcaa |
99 |
Q |
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| T |
7721932 |
ataacaatacttttccaaggttcccagagaaattcacccaagagtctagaatgaaaaaa-gagaagaaatgttattatattacatgcattgatgcattaa |
7721834 |
T |
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| Q |
100 |
gtcatttggaatgttactataatgtgaatttggaaataaagacatactttgatcaattgattgtataaccatctgagcataatttgccattcctccacag |
199 |
Q |
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| T |
7721833 |
gtcatgtggaatgttaatataatgtgaatttggaaataaagacatactttgatcaattgattgtataaccatctgagcataatttgccattcctccacag |
7721734 |
T |
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| Q |
200 |
aaatcaaggaacacatttccaatgctaaatccatctgtgctcttgatcatga |
251 |
Q |
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| T |
7721733 |
aaatcaaggaacacatttccaatgctaaatccatctgtgctcttgatcatga |
7721682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 7738147 - 7738104
Alignment:
| Q |
200 |
aaatcaaggaacacatttccaatgctaaatccatctgtgctctt |
243 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
7738147 |
aaatcaaggagaacattgccaatgctaaatccatctgtgctctt |
7738104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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