View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8788_high_5 (Length: 315)
Name: NF8788_high_5
Description: NF8788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8788_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 9559881 - 9560039
Alignment:
| Q |
17 |
aataatagcactatataagtggaccccattttgaattaaaaccaaacatacaaacaatattttatcaaagatattttacattttataatcaaaaaacaat |
116 |
Q |
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| T |
9559881 |
aataatagcactatataagtggaccccattttgaattaaaaccaaacatacaaacaatattttatcaaagatattttacattttataatcaaaaaacaat |
9559980 |
T |
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| Q |
117 |
aacaactgaacttaccaaacataacaagtgatgataataaacaaatataaatatctaac |
175 |
Q |
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| T |
9559981 |
aacaactgaacttaccaaacataacaagtgatgataataaacaaatataaatatctaac |
9560039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 227 - 302
Target Start/End: Original strand, 9560091 - 9560166
Alignment:
| Q |
227 |
gcttaggtaagtagtttccatgatccatggtggtgactctgaatatccaatcacatactttgcatattcttcttct |
302 |
Q |
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| T |
9560091 |
gcttaggtaagtagtttccatgatccatggtggtgactctgaatatccaatcacatactttgcatattcttcttct |
9560166 |
T |
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