View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8788_high_8 (Length: 270)
Name: NF8788_high_8
Description: NF8788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8788_high_8 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 5821897 - 5821628
Alignment:
| Q |
1 |
tgattttctaatttttcgatcttcagcaaagttagtggttgatttcctaagttcttcaagagaaaattgatgacatagctcttctataactgttggacat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5821897 |
tgattttctaatttttcgatcttcagcgaagttattggttgatttcctaagttcttcaagagaaaattgatgacatagctcttctataactgttggacat |
5821798 |
T |
|
| Q |
101 |
tttttattggatgaactttcatgcttcgaatattttacaaacatcttttcccacacgagagttttgtttgataatcaaggttcagattcaggtgtacaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5821797 |
tttttattggatgaactttcatgcttcgaatattttacaaacatctttccccacacgagagttttgtttgataatcaaggttcagattcaggtgtacaga |
5821698 |
T |
|
| Q |
201 |
agaatcaagcctacattgaatgagtcatgaaacatgaatgcctattagagaagaaagggtggtggtaaat |
270 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5821697 |
agaaccaagcctacattgaatgattcatgaaacatgaatgcctattagagaagaaggggtggtggtaaat |
5821628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 4908382 - 4908495
Alignment:
| Q |
27 |
caaagttagtggttgatttcctaagttcttcaagagaaaattgatgacatagctcttctataactgttggacattttttattggatgaactttcatgctt |
126 |
Q |
| |
|
|||||||| | || |||||| |||| || || |||||||||||||| ||| ||||||||||||| |||||| ||| ||| ||||| | ||||| | |||| |
|
|
| T |
4908382 |
caaagttattagtagatttcttaagatcatccagagaaaattgatggcatcgctcttctataacagttggatattgtttcttggaaggacttttacgctt |
4908481 |
T |
|
| Q |
127 |
cgaatattttacaa |
140 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4908482 |
tgaatattttacaa |
4908495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 4904444 - 4904532
Alignment:
| Q |
13 |
ttttcgatcttcagcaaagttagtggttgatttcctaagttcttcaagagaaaattgatgacatagctcttctataactgttggacatt |
101 |
Q |
| |
|
||||||| |||| |||||||| || |||||||| |||| |||||||||||||||||||| ||||| |||| |||| ||||||||||| |
|
|
| T |
4904444 |
ttttcgagtttcatcaaagttattgcttgatttcttaagatcttcaagagaaaattgatggcatagttcttttatagatgttggacatt |
4904532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 4927851 - 4927737
Alignment:
| Q |
4 |
ttttctaatttttcgatcttcagcaaagttagtggttgatttcctaagttcttcaagagaaaattgatgacatagctcttctataactgttggacatttt |
103 |
Q |
| |
|
||||| ||||||||||| |||| |||||||| |||| | |||| |||| || || |||||||| | ||| |||||||| | ||||| ||||| ||||| | |
|
|
| T |
4927851 |
ttttccaatttttcgattttcatcaaagttattggtagctttcttaagctcgtccagagaaaactcatggcatagctcatttataaatgttgaacattgt |
4927752 |
T |
|
| Q |
104 |
ttattggatgaactt |
118 |
Q |
| |
|
|| ||||| |||||| |
|
|
| T |
4927751 |
ttcttggacgaactt |
4927737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 4921603 - 4921495
Alignment:
| Q |
10 |
aatttttcgatcttcagcaaagttagtggttgatttcctaagttcttcaagagaaaattgatgacatagctcttctataactgttggacattttttattg |
109 |
Q |
| |
|
||||||||||| || | |||||||| |||| | |||| |||| || || |||||||| | ||| ||||| |||| ||||| ||||| ||||| ||| ||| |
|
|
| T |
4921603 |
aatttttcgatttttatcaaagttattggtagctttcttaagatcgtccagagaaaactcatggcatagttcttttataaatgttgaacattgtttcttg |
4921504 |
T |
|
| Q |
110 |
gatgaactt |
118 |
Q |
| |
|
|| |||||| |
|
|
| T |
4921503 |
gacgaactt |
4921495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University