View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8788_low_1 (Length: 510)
Name: NF8788_low_1
Description: NF8788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8788_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Original strand, 33547122 - 33547620
Alignment:
| Q |
1 |
gattatttgaagataaaa-aggtcacctgctacaacactgtatgactaacccaacttacctataaaaataaatggcacaatcatagtcaaaatgcacctc |
99 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33547122 |
gattatttgaagataaaaaaggtcacctgctacaacactgtatgactaacccaacttacctataaaaataaatggcacaatcatagtcaaaatgcacctc |
33547221 |
T |
|
| Q |
100 |
ttcaaccaaaaccaaactactatgtaaccatctcatataatttatttcaattttgcgtcctttatttatttggtaaaatcaattacctttatgattaaag |
199 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
33547222 |
ttcaaccaaaaccaaactaatatgtaaccatctcatataatttatttcaattttgcgtcctttatttgtttggtaaaatcaattacc-ttatgattaaag |
33547320 |
T |
|
| Q |
200 |
attgatgcaaaatgagataaatggtggagcacatgcaccaactctcaccgacgagagtcaatgtaaatgtctctatctctaatctagtcatctacaatgt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33547321 |
attgatgcaaaatgagataaatggtggagcacatgcaccaactctcaccgacgagagtcaatgtaaatgtctctatctctaatctagtcatctacaatgt |
33547420 |
T |
|
| Q |
300 |
tcacaaatttggtggtatatatactaactcata------attatggattctgaggagccaagttataaacattattagttctgcattcaaatgaaaataa |
393 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33547421 |
tcacaaatttggtggtatatatactaactcataaatactattatggattctgaggagccaagttataaacattaatagttctgcattcaaatgaaaataa |
33547520 |
T |
|
| Q |
394 |
attaaaccctcaaattctataggttaaactaaaaatgtattggatacacatgattgaagcagcatatgaggtagacaatgaaactaaaggacaggacaag |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33547521 |
attaaaccctcaaattctataggttaaactaaaaatgtattggatacacatgattgaagcagcatatgaggtagacaatgaaactaaaggacaagacaag |
33547620 |
T |
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