View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8788_low_2 (Length: 505)
Name: NF8788_low_2
Description: NF8788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8788_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 21 - 251
Target Start/End: Original strand, 15506631 - 15506861
Alignment:
| Q |
21 |
acatattcaaatactcaaatggctgtttactcttgaaagaaacataattctaagctgaaatatttgtctttaggactaggaagggtaaataaactctctc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||| |
|
|
| T |
15506631 |
acatattcaaatactcaaatggctgtttactcttgaaagaaacataattctaagctgaaatatttgtccataggacttgaaagggtaaataaactctctc |
15506730 |
T |
|
| Q |
121 |
atgagcttactcttacctcacattgatctcatactttcttgaacttgtgacaactatttagttgctctctctgacaataaagataagagtgctcacttca |
220 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15506731 |
atgagcttactcttacctcatattgatctcatactttcttgaacttgtgacaactatttagttgctctctctgacaataaagataagagtgctcacttca |
15506830 |
T |
|
| Q |
221 |
tagtacaaccctctcacacactgatataaca |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
15506831 |
tagtacaaccctctcacacactgatataaca |
15506861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 275 - 494
Target Start/End: Original strand, 15506887 - 15507106
Alignment:
| Q |
275 |
caaaatgataagccccttgaagagtactttatgggaggcacattcaatacttgaaatgctctagtattgcagccttaaatctccactagtattaattgga |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
15506887 |
caaaatgataagccccttgaagagtactttatgggaggcacattcaatacttgaaatgctctagtgttgcagccttaaatctccaccagtattaattgga |
15506986 |
T |
|
| Q |
375 |
gattgagttgaccaaagatcatatgaaagacatgatggaaatccagcaaacaaagttcatttcttgcctctttcaggcatgtcttgttttgttcttattt |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||| |
|
|
| T |
15506987 |
gattgagttgaccaaagatcatatgaaagacatgatgggaatccagcaaacaaagttcatttcattcctctttcaagcatgtcttgttttgttcttattt |
15507086 |
T |
|
| Q |
475 |
ccacttgttagttcatctca |
494 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
15507087 |
ccacttgttagttcatctca |
15507106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University