View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8788_low_3 (Length: 428)
Name: NF8788_low_3
Description: NF8788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8788_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 20 - 422
Target Start/End: Original strand, 114760 - 115167
Alignment:
| Q |
20 |
tctaatactagagagatgcaaattatgttttctttttatgttgctatttcaactttttgagcttatgaaatttatgttttcagaaaagatatttgtttgt |
119 |
Q |
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| T |
114760 |
tctaatactagagagatacaaattatgttttctttttatgttgctatttcaactttttgagcttatgaaatttatgttttcagaaaagatatttgtttgt |
114859 |
T |
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| Q |
120 |
tgtgttattataaaattaaaaatgaacctaaatcgtagaagagtttagaggatgattgtgatgaattaaactaatg-----aaatggatgaattacatga |
214 |
Q |
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| T |
114860 |
tgtgttattataaaattaaaaatgaacctaaatcgtagaagagtttagaggatgattgtgatgaattaaactaatgaaatgaaatggatgaattacatga |
114959 |
T |
|
| Q |
215 |
aaatatgaatcatgatacaaagttcatgacacgattacgcaatccaactaactgcctcaataaactaactaactccactgacttgttcaacaagtcacta |
314 |
Q |
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| T |
114960 |
aaatatgaatcatgatacaaagttcatgacacgattacgaaatccaactaactgcctcaataaactaactaactccactgacttgttcaacaagtcacta |
115059 |
T |
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| Q |
315 |
gcatactaactaaaacagctaattgcacaatatgaatcaattcacgaatcgattcactgcttacttgtattacaagtaaaagtaattattcataaacaag |
414 |
Q |
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| T |
115060 |
gcatactaactaaaacagctaattgcacaatatgaatcaattcacgaatcgattcactgcttacttgtattacaagtaaaagtaattattcataaacaag |
115159 |
T |
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| Q |
415 |
aattatct |
422 |
Q |
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| T |
115160 |
aattatct |
115167 |
T |
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Back To:
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Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 270 - 393
Target Start/End: Complemental strand, 36330092 - 36329973
Alignment:
| Q |
270 |
ctcaataaactaactaactccactgacttgttcaacaagtcactagcatactaactaaaacagctaattgcacaatatgaatcaattcacgaatcgattc |
369 |
Q |
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||||| ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||| |||||||||| |||||||||| |
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| T |
36330092 |
ctcaacaaactaagtaactcctctgacttgttcaacaagtcacta----actaactaaaacagttatttgcacaatataaatcaattcatgaatcgattc |
36329997 |
T |
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| Q |
370 |
actgcttacttgtattacaagtaa |
393 |
Q |
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||| |||||||| ||||||||||| |
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| T |
36329996 |
actacttacttgaattacaagtaa |
36329973 |
T |
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