View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8788_low_4 (Length: 421)
Name: NF8788_low_4
Description: NF8788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8788_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 22 - 338
Target Start/End: Complemental strand, 44623958 - 44623641
Alignment:
| Q |
22 |
ttataactcattctcctccatactaattgtagtt-ggttaaacttatcattatcaccttcaaattcacttctgggttcgatacttcttcttgttaaagca |
120 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44623958 |
ttataactcattctcctccatactaattgtagtttggttaaacttatcattatcaccttcaaattcacttctgggttcgatacttcttcttgttaaagca |
44623859 |
T |
|
| Q |
121 |
ctcaaacaagaattcttccagctatgaactttccaactccaactcatgccacgtcatcgccttctacttcttcctcctcctatacactcaaccacgcttc |
220 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44623858 |
ctcaaacaagaatttttccagctatgaactttccaactccaactcatgccacgtcatcgccttctacttcttcttcctcctatacactcaaccacgcttc |
44623759 |
T |
|
| Q |
221 |
tcctaatttcaaccgtcctccgtaagtcttccatttacaataatactctcatgtaattctttatcgcataagtgcttatttataagctgtttttgtaaca |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44623758 |
tcctaatttcaaccgtcctccgtaagtcttccatttacaataatactctcatgtaattctttatcgcataagtgcttatgtataagctgtttttgtaaca |
44623659 |
T |
|
| Q |
321 |
aacttaaattgtcttcat |
338 |
Q |
| |
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|||||||||||||||||| |
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| T |
44623658 |
aacttaaattgtcttcat |
44623641 |
T |
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