View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8788_low_5 (Length: 386)

Name: NF8788_low_5
Description: NF8788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8788_low_5
NF8788_low_5
[»] chr8 (3 HSPs)
chr8 (49-364)||(39308782-39309100)
chr8 (18-95)||(39309577-39309654)
chr8 (108-148)||(39309540-39309580)
[»] chr5 (4 HSPs)
chr5 (210-338)||(35130234-35130366)
chr5 (211-320)||(3635907-3636016)
chr5 (80-136)||(33529886-33529942)
chr5 (68-142)||(3635740-3635813)
[»] chr3 (4 HSPs)
chr3 (210-320)||(20918591-20918701)
chr3 (210-320)||(20927553-20927663)
chr3 (68-142)||(20918424-20918497)
chr3 (68-142)||(20927386-20927459)
[»] chr1 (1 HSPs)
chr1 (68-134)||(18526740-18526807)
[»] chr2 (1 HSPs)
chr2 (80-136)||(16871405-16871461)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 49 - 364
Target Start/End: Original strand, 39308782 - 39309100
Alignment:
Q  49 agcatgctcctctcctcagacaacacaccggcctccttcttctcatcatcatccttgcccatctgaatccctctcaccggtgccgccgtctcctctgtca 148  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||  |||||||||||||||||||||||    
T  39308782 agcatgctcctctcctgagacaacacaccggcctccttcttctcatcatcatctctgcccatctaaatccctctcgtcggtgccgccgtctcctctgtca 39308881  T
Q  149 aactccacctcctccttcttcaaacacaaca--gaaaagagcaattcaacaacctaataaaatcaagcaagaagaatattgcgattctccaaaaacttct 246  Q
     ||||| ||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  39308882 cactccgcctcctccttcttcagacacaacacagaaaagagcaattcaacaacctaataaaatcaagcaagaagaaaattgcaattctccaaaaacttct 39308981  T
Q  247 tgtaaaactgagcaaaaagagcaatgacgatgatgacagaccc-aacaacaacctaatattgctcaatttcacatactcaacctacccacgacaattcaa 345  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| || ||||||||||||||| ||||||||    
T  39308982 tgtaaaactgagcaaaaagagcaatgacgatgatgacagaccctagcaacaacctaatattgctcaatttcatatcctcaacctacccacggcaattcaa 39309081  T
Q  346 accaattcaatcccaagta 364  Q
    |||||||||||||||||||    
T  39309082 accaattcaatcccaagta 39309100  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 39309654 - 39309577
Alignment:
Q  18 aagggttgagattaaaatgttnnnnnnnnccagcatgctcctctcctcagacaacacaccggcctccttcttctcatc 95  Q
    ||||| |||||||||||||||        |||||||||||||||||| || |||||||||||||||||||||||||||    
T  39309654 aagggctgagattaaaatgttaaaaaaaaccagcatgctcctctcctgaggcaacacaccggcctccttcttctcatc 39309577  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 39309580 - 39309540
Alignment:
Q  108 catctgaatccctctcaccggtgccgccgtctcctctgtca 148  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  39309580 catctgaattcctctcgccggtgccgccgtctcctctgtca 39309540  T

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Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 210 - 338
Target Start/End: Original strand, 35130234 - 35130366
Alignment:
Q  210 caagcaagaagaatattgcgattctccaaaaa---cttcttgtaaaactgagcaaaaagagcaatgacgatgatgacagacccaa-caacaacctaatat 305  Q
    ||||||||||| | || ||||||||||  |||   ||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||    
T  35130234 caagcaagaaggaaatcgcgattctccggaaatttcttcttgtaaaactgagcaaagagagcaatgacgatgataacagacccaagcaacaacctaatat 35130333  T
Q  306 tgctcaatttcacatactcaacctacccacgac 338  Q
    ||||||||||||||| |||||| ||||||||||    
T  35130334 tgctcaatttcacatcctcaacatacccacgac 35130366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 211 - 320
Target Start/End: Original strand, 3635907 - 3636016
Alignment:
Q  211 aagcaagaagaatattgcgattctccaaaaacttcttgtaaaactgagcaaaaagagcaatgacgatgatgacagacccaa-caacaacctaatattgct 309  Q
    |||||| ||||| ||||| ||| |||| ||||  |||||||||||||||||||| |||||||| |||||||||| |||||| ||||||||||||||||||    
T  3635907 aagcaaaaagaaaattgctattttccagaaacaacttgtaaaactgagcaaaaa-agcaatgaggatgatgacaaacccaagcaacaacctaatattgct 3636005  T
Q  310 caatttcacat 320  Q
    |||||||||||    
T  3636006 caatttcacat 3636016  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 33529886 - 33529942
Alignment:
Q  80 cctccttcttctcatcatcatccttgcccatctgaatccctctcaccggtgccgccg 136  Q
    |||||||||||| | |||||||| |||||||||||||||||||||||||||||||||    
T  33529886 cctccttcttctaaacatcatccctgcccatctgaatccctctcaccggtgccgccg 33529942  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 142
Target Start/End: Original strand, 3635740 - 3635813
Alignment:
Q  68 acaacacaccggcctccttcttctcatcatcatccttgcccatctgaatccctctcaccggtgccgccgtctcct 142  Q
    ||||| ||||| ||||||||||||||||||||||| || ||||||||||||| ||  |||||||||||| |||||    
T  3635740 acaacccaccgacctccttcttctcatcatcatccctgtccatctgaatccc-cttgccggtgccgccgcctcct 3635813  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 210 - 320
Target Start/End: Original strand, 20918591 - 20918701
Alignment:
Q  210 caagcaagaagaatattgcgattctccaaaaacttcttgtaaaactgagcaaaaagagcaatgacgatgatgacagacccaa-caacaacctaatattgc 308  Q
    ||||||| ||||| ||||| ||| |||| ||||  |||||||||||||||||||| |  |||||||||||||||| |||||| |||||||||||||||||    
T  20918591 caagcaaaaagaaaattgctattttccagaaacaacttgtaaaactgagcaaaaaaaa-aatgacgatgatgacaaacccaagcaacaacctaatattgc 20918689  T
Q  309 tcaatttcacat 320  Q
    ||||||||||||    
T  20918690 tcaatttcacat 20918701  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 210 - 320
Target Start/End: Original strand, 20927553 - 20927663
Alignment:
Q  210 caagcaagaagaatattgcgattctccaaaaacttcttgtaaaactgagcaaaaagagcaatgacgatgatgacagacccaa-caacaacctaatattgc 308  Q
    ||||||| ||||| ||||| ||| |||| ||||  |||||||||||||||||||| |  |||||||||||||||| |||||| |||||||||||||||||    
T  20927553 caagcaaaaagaaaattgctattttccagaaacaacttgtaaaactgagcaaaaaaaa-aatgacgatgatgacaaacccaagcaacaacctaatattgc 20927651  T
Q  309 tcaatttcacat 320  Q
    ||||||||||||    
T  20927652 tcaatttcacat 20927663  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 142
Target Start/End: Original strand, 20918424 - 20918497
Alignment:
Q  68 acaacacaccggcctccttcttctcatcatcatccttgcccatctgaatccctctcaccggtgccgccgtctcct 142  Q
    ||||| ||||| ||||||||||||||||||||||| || ||||||||||||| ||  |||||||||||| |||||    
T  20918424 acaacccaccgacctccttcttctcatcatcatccctgtccatctgaatccc-cttgccggtgccgccgcctcct 20918497  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 142
Target Start/End: Original strand, 20927386 - 20927459
Alignment:
Q  68 acaacacaccggcctccttcttctcatcatcatccttgcccatctgaatccctctcaccggtgccgccgtctcct 142  Q
    ||||| ||||| ||||||||||||||||||||||| || ||||||||||||| ||  |||||||||||| |||||    
T  20927386 acaacccaccgacctccttcttctcatcatcatccctgtccatctgaatccc-cttgccggtgccgccgcctcct 20927459  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 18526740 - 18526807
Alignment:
Q  68 acaacacaccggcctccttcttctcatcatcatccttgcccatctg-aatccctctcaccggtgccgc 134  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||    
T  18526740 acaacacactggcctccttcttctcatcatcatccctgcccatctgaaatccctctcgccggtgccgc 18526807  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 16871461 - 16871405
Alignment:
Q  80 cctccttcttctcatcatcatccttgcccatctgaatccctctcaccggtgccgccg 136  Q
    |||||||||||| | |||||||| |||||||||||||||||||||||||||||||||    
T  16871461 cctccttcttctaaacatcatccctgcccatctgaatccctctcaccggtgccgccg 16871405  T

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