View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8788_low_6 (Length: 373)

Name: NF8788_low_6
Description: NF8788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8788_low_6
NF8788_low_6
[»] chr4 (15 HSPs)
chr4 (19-360)||(7023820-7024161)
chr4 (258-359)||(31859741-31859842)
chr4 (282-360)||(34864160-34864237)
chr4 (258-359)||(33519203-33519304)
chr4 (291-359)||(5676373-5676441)
chr4 (22-136)||(29437826-29437941)
chr4 (262-360)||(46647367-46647465)
chr4 (282-359)||(15192377-15192453)
chr4 (262-359)||(17187346-17187443)
chr4 (291-358)||(5906636-5906703)
chr4 (19-70)||(12028481-12028532)
chr4 (329-359)||(9288383-9288413)
chr4 (291-360)||(12111201-12111269)
chr4 (258-359)||(19601972-19602072)
chr4 (258-359)||(26159929-26160028)
[»] chr2 (16 HSPs)
chr2 (245-358)||(18236130-18236243)
chr2 (291-355)||(21505012-21505076)
chr2 (22-113)||(18235919-18236010)
chr2 (259-359)||(18818875-18818975)
chr2 (258-356)||(17415004-17415101)
chr2 (282-359)||(27417127-27417204)
chr2 (291-359)||(17152327-17152395)
chr2 (21-65)||(17884158-17884202)
chr2 (291-359)||(31262170-31262238)
chr2 (282-348)||(16593615-16593681)
chr2 (291-357)||(31274131-31274197)
chr2 (330-359)||(19541210-19541239)
chr2 (22-71)||(31262430-31262479)
chr2 (294-358)||(1732725-1732789)
chr2 (259-359)||(17884484-17884584)
chr2 (282-350)||(30998953-30999021)
[»] chr7 (17 HSPs)
chr7 (232-359)||(18496738-18496865)
chr7 (258-359)||(1074626-1074727)
chr7 (28-178)||(5312392-5312542)
chr7 (282-360)||(29544692-29544770)
chr7 (291-359)||(23125074-23125142)
chr7 (296-359)||(5312664-5312727)
chr7 (294-355)||(20470686-20470747)
chr7 (21-136)||(24596590-24596706)
chr7 (282-358)||(20017128-20017203)
chr7 (21-71)||(5636676-5636726)
chr7 (310-359)||(12358655-12358704)
chr7 (291-359)||(21545700-21545768)
chr7 (291-350)||(7493495-7493554)
chr7 (258-341)||(8308876-8308959)
chr7 (103-154)||(1074880-1074932)
chr7 (291-359)||(4977694-4977761)
chr7 (259-359)||(24596845-24596945)
[»] chr1 (17 HSPs)
chr1 (248-359)||(25373919-25374030)
chr1 (282-360)||(11769858-11769936)
chr1 (291-360)||(25494362-25494431)
chr1 (257-359)||(26854159-26854261)
chr1 (259-359)||(21548821-21548921)
chr1 (282-355)||(30675662-30675734)
chr1 (282-357)||(50047350-50047425)
chr1 (247-336)||(34935165-34935254)
chr1 (258-359)||(52271085-52271186)
chr1 (294-350)||(23519645-23519701)
chr1 (21-69)||(25778208-25778256)
chr1 (308-359)||(18300893-18300944)
chr1 (297-359)||(25727788-25727850)
chr1 (297-359)||(25736196-25736258)
chr1 (282-350)||(12423779-12423847)
chr1 (21-69)||(25730949-25730997)
chr1 (306-362)||(31319499-31319555)
[»] chr5 (15 HSPs)
chr5 (291-358)||(16634221-16634288)
chr5 (282-359)||(11274194-11274271)
chr5 (282-359)||(16622541-16622617)
chr5 (258-359)||(18178275-18178375)
chr5 (282-355)||(19763750-19763823)
chr5 (19-136)||(25368042-25368161)
chr5 (19-95)||(7742477-7742553)
chr5 (296-360)||(7742748-7742812)
chr5 (259-359)||(26070647-26070747)
chr5 (291-362)||(11997766-11997837)
chr5 (294-360)||(17027700-17027765)
chr5 (282-360)||(30072288-30072366)
chr5 (291-360)||(18452685-18452754)
chr5 (282-359)||(26329934-26330010)
chr5 (291-359)||(25594565-25594633)
[»] chr8 (20 HSPs)
chr8 (226-359)||(14424621-14424754)
chr8 (282-359)||(16052141-16052218)
chr8 (291-359)||(5570013-5570081)
chr8 (259-359)||(5153931-5154031)
chr8 (295-359)||(28291978-28292042)
chr8 (291-350)||(13081808-13081867)
chr8 (282-349)||(24120407-24120474)
chr8 (295-359)||(6888070-6888134)
chr8 (282-350)||(16054476-16054544)
chr8 (307-359)||(24696755-24696807)
chr8 (282-346)||(28902275-28902339)
chr8 (22-66)||(30544204-30544248)
chr8 (257-336)||(27097641-27097720)
chr8 (257-359)||(11437593-11437695)
chr8 (273-359)||(30850955-30851041)
chr8 (22-59)||(18771414-18771451)
chr8 (238-359)||(32239461-32239582)
chr8 (307-359)||(13583409-13583461)
chr8 (118-154)||(14184308-14184344)
chr8 (21-73)||(27085163-27085215)
[»] chr3 (11 HSPs)
chr3 (294-359)||(16970635-16970700)
chr3 (291-359)||(19219084-19219152)
chr3 (282-350)||(25883285-25883353)
chr3 (22-136)||(22992279-22992393)
chr3 (239-341)||(18474361-18474463)
chr3 (269-359)||(21828984-21829074)
chr3 (27-69)||(22489678-22489720)
chr3 (21-71)||(33578227-33578277)
chr3 (282-359)||(21018051-21018127)
chr3 (291-346)||(18065982-18066038)
chr3 (21-132)||(26298186-26298298)
[»] scaffold0011 (1 HSPs)
scaffold0011 (258-357)||(228027-228125)
[»] chr6 (12 HSPs)
chr6 (262-359)||(26499691-26499788)
chr6 (258-368)||(14924260-14924368)
chr6 (293-359)||(33638259-33638325)
chr6 (298-359)||(24618056-24618117)
chr6 (282-359)||(30355490-30355567)
chr6 (294-359)||(33638381-33638446)
chr6 (245-359)||(16439631-16439745)
chr6 (19-84)||(12971943-12972008)
chr6 (32-144)||(15318451-15318564)
chr6 (294-359)||(24507319-24507383)
chr6 (282-350)||(15575106-15575174)
chr6 (282-350)||(17860313-17860381)
[»] scaffold0171 (2 HSPs)
scaffold0171 (296-359)||(6369-6431)
scaffold0171 (307-359)||(21571-21623)
[»] scaffold0188 (1 HSPs)
scaffold0188 (293-359)||(26830-26896)
[»] scaffold0362 (1 HSPs)
scaffold0362 (282-352)||(7799-7869)
[»] scaffold0337 (1 HSPs)
scaffold0337 (294-359)||(1982-2046)
[»] scaffold0282 (1 HSPs)
scaffold0282 (282-359)||(22478-22554)


Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 7023820 - 7024161
Alignment:
Q  19 aactttctaaatgaataaaagcgtgtgcaatggtctctatttttagtgcatcactgcataggggtttagagatgaaatttaggattttccactaaaaata 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7023820 aactttctcaatgaataaaagcgtgtgcaatggtctctatttttagtgcatcactgcataggggtttagagatgaaatttaggattttccactaaaaata 7023919  T
Q  119 gcttggaaaacaagcaaaaggcacctcctggccgtctgccatgtgcggggtgcatgaagtaagacacatggcccatgcgtagggcgcatggggtagcagc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7023920 gcttggaaaacaagcaaaaggcacctcctggccgtctgccatgtgcggggtgcatgaagtaagacacatggcccatgcgtagggcgcatggggtagcagc 7024019  T
Q  219 tccagcacaaattttgcactttttcaccctttttcggttgttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatctt 318  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7024020 tccagcacaaattttgcactttttcaccctttttcggtcgttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatctt 7024119  T
Q  319 caagaatcttctaagaaccattggtcttcaatcttcatatct 360  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7024120 caagaatcttctaagaaccattggtcttcaatcttcatatct 7024161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 359
Target Start/End: Original strand, 31859741 - 31859842
Alignment:
Q  258 gttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcata 357  Q
    |||||||||| |||||||| ||| |||||| | || |||||||||||  ||||||| |||||||  | |||||||||||||||| |||||||| ||||||    
T  31859741 gttcttccgtcttgaaatgccttggaacttgaaataaattttcttcactttgtattgtcttcaaataccttctaagaaccattgatcttcaatattcata 31859840  T
Q  358 tc 359  Q
    ||    
T  31859841 tc 31859842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 360
Target Start/End: Original strand, 34864160 - 34864237
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatct 360  Q
    |||||||| ||||||||||||||| ||||||| ||| ||| || ||||||||||||||| | ||||||||| |||||||    
T  34864160 gaactttaaatgaattttcttcattttgtattgtctacaaaaaccttctaagaaccatt-gacttcaatctccatatct 34864237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 359
Target Start/End: Complemental strand, 33519304 - 33519203
Alignment:
Q  258 gttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcata 357  Q
    ||||||| || | |||||| ||| ||| || | |||||||||||||| |||||||| |||||||  | ||||||||||| |||| ||||||||| |||||    
T  33519304 gttcttctgtctggaaatgccttggaatttgaaatgaattttcttcaacttgtattgtcttcaaagaccttctaagaacgattgatcttcaatcgtcata 33519205  T
Q  358 tc 359  Q
    ||    
T  33519204 tc 33519203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 5676441 - 5676373
Alignment:
Q  291 atgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    ||||||||||||||||||||||| ||||||| || |||||||||| |||| || ||||| ||| |||||    
T  5676441 atgaattttcttcatcttgtattgtcttcaaaaaccttctaagaatcatttgtattcaaacttaatatc 5676373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 29437941 - 29437826
Alignment:
Q  22 tttctaaatgaataaaagcgtgtgcaatggtctctatttttagtgcatcactgcataggggtttagaga-tgaaatttaggattttccactaaaaatagc 120  Q
    ||||| |||||||| ||| ||||||||  |||||||||| |||||||| | | | |||||||| ||||| ||||| |  || |||||||| |||||  ||    
T  29437941 tttctgaatgaatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggc 29437842  T
Q  121 ttggaaaacaagcaaa 136  Q
    ||||||||||||||||    
T  29437841 ttggaaaacaagcaaa 29437826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 360
Target Start/End: Complemental strand, 46647465 - 46647367
Alignment:
Q  262 ttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatct 360  Q
    |||||| ||||||||||||  || |||  ||||||||||  || ||||||||||||| || || ||| |||||||||||| |||||| | |||||||||    
T  46647465 ttccgtcttgaaatgtcttgtaattttggatgaattttccccaacttgtattatctttaaaaaccttttaagaaccattgatcttcatttttcatatct 46647367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 359
Target Start/End: Complemental strand, 15192453 - 15192377
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||| | ||||||| ||||||  ||| ||| ||||||| || ||||||||||||||||||||||||| ||||||||    
T  15192453 gaacttgaaatgaattgtcttcactttgaattgtcttcaacaaccttctaagaaccattggtcttcaat-ttcatatc 15192377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 359
Target Start/End: Complemental strand, 17187443 - 17187346
Alignment:
Q  262 ttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||| ||| ||||||||  ||||| | |||||||||||| |  ||||||| |||||||  | ||||||||||||| ||  ||||||||||||||||    
T  17187443 ttccgtcttgcaatgtcttgaaacttgaaatgaattttctttactttgtattgtcttcaaataacttctaagaaccactgaacttcaatcttcatatc 17187346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 358
Target Start/End: Original strand, 5906636 - 5906703
Alignment:
Q  291 atgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatat 358  Q
    |||||||||||| |  ||||||||||||||| || |||||||||||||||  |||| |||||| ||||    
T  5906636 atgaattttcttaactttgtattatcttcaaaaaccttctaagaaccattaatcttaaatcttaatat 5906703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 12028481 - 12028532
Alignment:
Q  19 aactttctaaatgaataaaagcgtgtgcaatggtctctatttttagtgcatc 70  Q
    |||||||| |||||||||||| ||||||||  |||||||||| |||||||||    
T  12028481 aactttctgaatgaataaaagagtgtgcaagagtctctatttatagtgcatc 12028532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 359
Target Start/End: Complemental strand, 9288413 - 9288383
Alignment:
Q  329 ctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||||||||||||||||||||||||||||    
T  9288413 ctaagaaccattggtcttcaatcttcatatc 9288383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 360
Target Start/End: Original strand, 12111201 - 12111269
Alignment:
Q  291 atgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatct 360  Q
    ||||||||||||||  |||||||||||| || || ||| ||||||||||| | ||||||| |||||||||    
T  12111201 atgaattttcttcactttgtattatcttaaaaaaccttataagaaccatt-gacttcaatattcatatct 12111269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 359
Target Start/End: Complemental strand, 19602072 - 19601972
Alignment:
Q  258 gttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcata 357  Q
    ||||||||||| || | |||||| |||| | | ||||||||||| ||  || |||| ||||||| || ||| ||||||||||| |||||||||| |||||    
T  19602072 gttcttccgtgctgcattgtcttggaacatgaaatgaattttctccactttttattgtcttcaaaaaccttttaagaaccatt-gtcttcaatcatcata 19601974  T
Q  358 tc 359  Q
    ||    
T  19601973 tc 19601972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 359
Target Start/End: Complemental strand, 26160028 - 26159929
Alignment:
Q  258 gttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcata 357  Q
    |||||||||| |||||||  ||| |||||| | |||||||||||||| ||| | | || |||||  | ||| |||||||||||| |||||||||||||||    
T  26160028 gttcttccgtcttgaaatc-cttggaacttgaaatgaattttcttcaacttatttgat-ttcaaagaccttataagaaccattgatcttcaatcttcata 26159931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 245 - 358
Target Start/End: Original strand, 18236130 - 18236243
Alignment:
Q  245 ccctttttcggttgttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtc 344  Q
    |||||||||| |  ||||||||| || ||||| ||| |||||| | ||||||||||||||||||||||| ||||||| || ||||||||||||||||| |    
T  18236130 ccctttttcgatcattcttccgtctttaaatgcctttgaacttgaaatgaattttcttcatcttgtattgtcttcaacaaccttctaagaaccattggcc 18236229  T
Q  345 ttcaatcttcatat 358  Q
    ||||||||||||||    
T  18236230 ttcaatcttcatat 18236243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 21505012 - 21505076
Alignment:
Q  291 atgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttca 355  Q
    |||||||||||||| |||||||| ||||||| || ||||| |||||||||||||||||| |||||    
T  21505012 atgaattttcttcaacttgtattgtcttcaaaaaccttctcagaaccattggtcttcaaacttca 21505076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 18235919 - 18236010
Alignment:
Q  22 tttctaaatgaataaaagcgtgtgcaatggtctctatttttagtgcatcactgcataggggtttagagatgaaatttaggattttccactaa 113  Q
    |||||||||||||||||| |||| |||  |||||||| | || ||||||| | | |||||||| |||||| ||| |||||||||||||||||    
T  18235919 tttctaaatgaataaaagtgtgtacaagagtctctatctataatgcatcattacttaggggttaagagataaaaattaggattttccactaa 18236010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 359
Target Start/End: Complemental strand, 18818975 - 18818875
Alignment:
Q  259 ttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatat 358  Q
    ||||||||| ||| |||||||| |||||| |  |||||||||||||  ||||||| |||||||  | |||||||||||||||  |||||| | |||||||    
T  18818975 ttcttccgtcttgcaatgtcttggaacttgaattgaattttcttcactttgtattgtcttcaaagaccttctaagaaccattaatcttcagttttcatat 18818876  T
Q  359 c 359  Q
    |    
T  18818875 c 18818875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 356
Target Start/End: Original strand, 17415004 - 17415101
Alignment:
Q  258 gttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcat 356  Q
    |||||||||| ||| ||||||||||||||| | ||||||||||||||  || | || |||||||  | || ||||||||||||| | ||||||||||||    
T  17415004 gttcttccgtcttgcaatgtcttagaacttgaaatgaattttcttcactttttgttgtcttcaaataactcctaagaaccattgat-ttcaatcttcat 17415101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 27417127 - 27417204
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||| | ||||||||||||||  ||||||| | ||||| || ||||| ||||||||||||||||||  ||||||||    
T  27417127 gaacttgaaatgaattttcttcactttgtattgttttcaaaaaccttcttagaaccattggtcttcaacattcatatc 27417204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 17152395 - 17152327
Alignment:
Q  291 atgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    ||||||||||  || |||||||||||||||| || |||||||||||||||  | |||| ||||||||||    
T  17152395 atgaattttccccaacttgtattatcttcaaaaaccttctaagaaccattcatattcattcttcatatc 17152327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 17884158 - 17884202
Alignment:
Q  21 ctttctaaatgaataaaagcgtgtgcaatggtctctatttttagt 65  Q
    |||||||||||||||||||  ||||||||||||||||||| ||||    
T  17884158 ctttctaaatgaataaaagtatgtgcaatggtctctatttatagt 17884202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 31262238 - 31262170
Alignment:
Q  291 atgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||||||||||| ||| |||| |||||||  | || ||||||||||||  |||||||||||||||||    
T  31262238 atgaattttcttcaacttatattgtcttcaaagacctactaagaaccattaatcttcaatcttcatatc 31262170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 16593615 - 16593681
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttca 348  Q
    |||||| | ||||||||||||||  ||||||| ||||||| || |||||||||||| ||| ||||||    
T  16593615 gaacttgaaatgaattttcttcactttgtattgtcttcaacaaccttctaagaacccttgatcttca 16593681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 357
Target Start/End: Complemental strand, 31274197 - 31274131
Alignment:
Q  291 atgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcata 357  Q
    |||||||||||||| ||| |||| |||||||  | |||||||||||||||  |||||||| ||||||    
T  31274197 atgaattttcttcaacttatattgtcttcaaagaccttctaagaaccattaatcttcaattttcata 31274131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 359
Target Start/End: Complemental strand, 19541239 - 19541210
Alignment:
Q  330 taagaaccattggtcttcaatcttcatatc 359  Q
    ||||||||||||||||||||||||||||||    
T  19541239 taagaaccattggtcttcaatcttcatatc 19541210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 31262479 - 31262430
Alignment:
Q  22 tttctaaatgaataaaagcgtgtgcaatggtctctatttttagtgcatca 71  Q
    |||||||||||||||||| |||| |||  |||||||||| ||||||||||    
T  31262479 tttctaaatgaataaaagagtgtacaagtgtctctatttatagtgcatca 31262430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 1732789 - 1732725
Alignment:
Q  294 aattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatat 358  Q
    |||||| ||||| |||||||  ||||||  || ||||||||| ||||| ||||||||||||||||    
T  1732789 aattttattcattttgtattgccttcaaatatattctaagaatcattgatcttcaatcttcatat 1732725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 359
Target Start/End: Original strand, 17884484 - 17884584
Alignment:
Q  259 ttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatat 358  Q
    ||||||||| || ||||||||||||||||   ||||||||||| |   ||||||  | ||||| || |||||||||| || || |||||| |||||||||    
T  17884484 ttcttccgtcttaaaatgtcttagaacttgggatgaattttctccggtttgtatagttttcaaaaaccttctaagaatcaatgatcttcattcttcatat 17884583  T
Q  359 c 359  Q
    |    
T  17884584 c 17884584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 30999021 - 30998953
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaat 350  Q
    |||||| | ||||||||||| ||  ||||||| ||||||| || |||||||||||| ||| ||||||||    
T  30999021 gaacttgaaatgaattttctccactttgtattgtcttcaacaaccttctaagaacccttgatcttcaat 30998953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 232 - 359
Target Start/End: Complemental strand, 18496865 - 18496738
Alignment:
Q  232 ttgcactttttcaccctttttcggttgttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttcta 331  Q
    ||||| |||||| ||||||||||   |||||| ||| |||||||| ||| |||||| | ||||||||||||||||||||||| ||||||| ||  |||||    
T  18496865 ttgcagtttttcgccctttttcgaccgttcttacgtcttgaaatgccttggaacttgaaatgaattttcttcatcttgtattttcttcaacaacattcta 18496766  T
Q  332 agaaccattggtcttcaatcttcatatc 359  Q
    |||||||||  |||||||||||||||||    
T  18496765 agaaccattattcttcaatcttcatatc 18496738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 258 - 359
Target Start/End: Complemental strand, 1074727 - 1074626
Alignment:
Q  258 gttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcata 357  Q
    |||||||||| |||||||||||| |||||| | || | |||||||||||||||||| ||||||| || ||| ||||||||||||||||||||| ||||||    
T  1074727 gttcttccgtcttgaaatgtcttggaacttgaaattacttttcttcatcttgtattgtcttcaacaaccttttaagaaccattggtcttcaattttcata 1074628  T
Q  358 tc 359  Q
    ||    
T  1074627 tc 1074626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 178
Target Start/End: Original strand, 5312392 - 5312542
Alignment:
Q  28 aatgaataaaagcgtgtgcaatggtctctatttttagtgcatcactgcataggggtttagagatgaaatttaggattttccactaaaaatagcttggaaa 127  Q
    |||||||||||  ||||||||  |||||| ||| |||| ||||| | | |||||||| |||| ||||| || || |||||||||||||| | ||||||||    
T  5312392 aatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagaggtgaaaatttgggttttccactaaaaacaacttggaaa 5312491  T
Q  128 acaagcaaaaggcacctcctggccgtctgccatgtgcggggtgcatgaagt 178  Q
    ||||||||||| ||||||||| | |||  ||| ||| |||| |||||||||    
T  5312492 acaagcaaaagtcacctcctgtctgtcaaccaagtgtggggcgcatgaagt 5312542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 360
Target Start/End: Complemental strand, 29544770 - 29544692
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatct 360  Q
    |||||| | ||||||||||||||  ||||||| ||||||| || |||||||||| ||||| ||||||||||||||||||    
T  29544770 gaacttgaaatgaattttcttcactttgtattgtcttcaaaaaccttctaagaatcattgatcttcaatcttcatatct 29544692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 23125142 - 23125074
Alignment:
Q  291 atgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    ||||||||||||||  ||||||| |||| ||||||||| ||||||||||||  ||||||||||||||||    
T  23125142 atgaattttcttcactttgtattgtctttaagaatcttataagaaccattgaacttcaatcttcatatc 23125074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 296 - 359
Target Start/End: Original strand, 5312664 - 5312727
Alignment:
Q  296 ttttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||  | ||||||| |||||||    
T  5312664 ttttcttcatcttgtattgtcttcaaaaatcttctaagaaccatttatgttcaatcctcatatc 5312727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 355
Target Start/End: Original strand, 20470686 - 20470747
Alignment:
Q  294 aattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttca 355  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||||||  ||||||| ||||    
T  20470686 aattttcttcattttgtattgtcttcaagaaccttctaagaaccattgaacttcaatattca 20470747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 24596590 - 24596706
Alignment:
Q  21 ctttctaaatgaataaaagcgtgtgcaatggtctctatttttagtgcatcactgcataggggtttagaga-tgaaatttagga-ttttccactaaaaata 118  Q
    |||||| |||||||||||| |||||||||||||||||||| || ||||| | |  ||| ||||| ||| | |||||  ||||| |||||||| ||||||     
T  24596590 ctttctgaatgaataaaagagtgtgcaatggtctctatttataatgcatgattatatacgggttaagatagtgaaa-ataggagttttccaccaaaaatg 24596688  T
Q  119 gcttggaaaacaagcaaa 136  Q
    ||||||||||||||||||    
T  24596689 gcttggaaaacaagcaaa 24596706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 358
Target Start/End: Complemental strand, 20017203 - 20017128
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatat 358  Q
    |||||| | ||||||||||||||  ||||||| |||||||||| ||||||||||||||| |  ||||||||||||||    
T  20017203 gaacttgaaatgaattttcttcactttgtattgtcttcaagaaccttctaagaaccatt-gagttcaatcttcatat 20017128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 5636726 - 5636676
Alignment:
Q  21 ctttctaaatgaataaaagcgtgtgcaatggtctctatttttagtgcatca 71  Q
    |||||| |||||||||||| |||||||| ||||||||||| ||||||||||    
T  5636726 ctttctgaatgaataaaagtgtgtgcaagggtctctatttatagtgcatca 5636676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 12358655 - 12358704
Alignment:
Q  310 tattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||| ||||||| || |||||||||||||||| |||||||||||||||||    
T  12358655 tattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcatatc 12358704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 21545700 - 21545768
Alignment:
Q  291 atgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    ||||||||||||||  || |||| |||||||  |  ||||||||||||||| |||||||||||||||||    
T  21545700 atgaattttcttcactttttattgtcttcaaatactttctaagaaccattgatcttcaatcttcatatc 21545768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 7493554 - 7493495
Alignment:
Q  291 atgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaat 350  Q
    ||||||||| ||||| ||||||||||||||| || ||| |||||||| ||| ||||||||    
T  7493554 atgaatttttttcattttgtattatcttcaataaccttttaagaacccttgatcttcaat 7493495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 341
Target Start/End: Original strand, 8308876 - 8308959
Alignment:
Q  258 gttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattg 341  Q
    |||||||||| ||| |||  ||| |||||| |||||||| ||||| || ||||||| |||||||  | ||||||||||||||||    
T  8308876 gttcttccgtcttgcaataccttggaacttgatatgaatcttctttattttgtattgtcttcaaagaccttctaagaaccattg 8308959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 1074932 - 1074880
Alignment:
Q  103 ttttccact-aaaaatagcttggaaaacaagcaaaaggcacctcctggccgtc 154  Q
    ||||||||| ||||| | ||||||||||||||||||| |||||| ||||||||    
T  1074932 ttttccactgaaaaacatcttggaaaacaagcaaaagacacctcatggccgtc 1074880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 4977694 - 4977761
Alignment:
Q  291 atgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    ||||||||| ||||| ||||||| ||||||| | |||||||| |||||| |  ||||||||||||||||    
T  4977694 atgaattttgttcattttgtattttcttcaaaagtcttctaaaaaccatagc-cttcaatcttcatatc 4977761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 359
Target Start/End: Original strand, 24596845 - 24596945
Alignment:
Q  259 ttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatat 358  Q
    ||||| ||| ||| |||| ||| |||||| | ||||||||||||||  ||||||| |||||||   ||||||| |||||| ||  |||||||||| ||||    
T  24596845 ttctttcgtcttgcaatgccttggaacttcaaatgaattttcttcactttgtattgtcttcaaatttcttctatgaaccactgaacttcaatctttatat 24596944  T
Q  359 c 359  Q
    |    
T  24596945 c 24596945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 359
Target Start/End: Complemental strand, 25374030 - 25373919
Alignment:
Q  248 tttttcggttgttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttc 347  Q
    ||||||| |||| ||| | | ||||||||  || |||||| | ||||||||||||||||||||||| |||| || || |||||||||||||||||||||     
T  25374030 tttttcgattgtactttcatcttgaaatgcttttgaacttgaaatgaattttcttcatcttgtattgtcttaaacaaccttctaagaaccattggtcttt 25373931  T
Q  348 aatcttcatatc 359  Q
    ||||||||||||    
T  25373930 aatcttcatatc 25373919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 282 - 360
Target Start/End: Original strand, 11769858 - 11769936
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatct 360  Q
    |||||| | ||||||||||||||  ||||||| ||||||| || |||||||||||||||||||||||||||||||||||    
T  11769858 gaacttgaaatgaattttcttcactttgtattgtcttcaaaaaccttctaagaaccattggtcttcaatcttcatatct 11769936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 291 - 360
Target Start/End: Original strand, 25494362 - 25494431
Alignment:
Q  291 atgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatct 360  Q
    ||||||||||||||  ||||||| ||||||| || |||||||||||||||||||||||||||||||||||    
T  25494362 atgaattttcttcactttgtattgtcttcaaaaaccttctaagaaccattggtcttcaatcttcatatct 25494431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 257 - 359
Target Start/End: Original strand, 26854159 - 26854261
Alignment:
Q  257 tgttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcat 356  Q
    ||||||||| | ||| |||| ||| |||||| | ||||||||||||||  ||||||| |||||||  ||||||||||||||||||  |||||||||||||    
T  26854159 tgttcttccatcttgcaatgccttggaacttcaaatgaattttcttcactttgtattgtcttcaaatatcttctaagaaccattgaacttcaatcttcat 26854258  T
Q  357 atc 359  Q
    |||    
T  26854259 atc 26854261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 359
Target Start/End: Complemental strand, 21548921 - 21548821
Alignment:
Q  259 ttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatat 358  Q
    ||||| ||| ||| |||| ||| |||||| | ||||||||| |||| ||||||||||||||||   ||||||||||||||||   |||||||||||||||    
T  21548921 ttctttcgtcttgtaatgccttggaacttcaaatgaatttttttcaacttgtattatcttcaaatgtcttctaagaaccatttagcttcaatcttcatat 21548822  T
Q  359 c 359  Q
    |    
T  21548821 c 21548821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 355
Target Start/End: Complemental strand, 30675734 - 30675662
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttca 355  Q
    |||||| | ||||||||||||||  ||||||||||||||| || |||||||||||||||| | |||||||||||    
T  30675734 gaacttgaaatgaattttcttcactttgtattatcttcaaaaaccttctaagaaccattgat-ttcaatcttca 30675662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 357
Target Start/End: Complemental strand, 50047425 - 50047350
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcata 357  Q
    |||||| | ||||||||||||||| ||||||| ||||||| || ||| |||| ||||||| |||||||| ||||||    
T  50047425 gaacttaaaatgaattttcttcattttgtattgtcttcaataaccttttaagtaccattgatcttcaatattcata 50047350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 336
Target Start/End: Original strand, 34935165 - 34935254
Alignment:
Q  247 ctttttcggttgttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaac 336  Q
    ||||||||  ||||| ||||| |||||||| ||||||||||   ||||||||||  || |||||||||||||||| || ||| |||||||    
T  34935165 ctttttcgagtgttcatccgtcttgaaatgccttagaacttgggatgaattttccccaacttgtattatcttcaaaaaccttataagaac 34935254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 359
Target Start/End: Original strand, 52271085 - 52271186
Alignment:
Q  258 gttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcata 357  Q
    |||||||||| ||| |||  ||| ||| || | ||||||||||||||  ||||||| |||||||  | |||||||| |||||||  ||||||||||||||    
T  52271085 gttcttccgtcttgcaattccttggaatttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaacttcaatcttcata 52271184  T
Q  358 tc 359  Q
    ||    
T  52271185 tc 52271186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 23519645 - 23519701
Alignment:
Q  294 aattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaat 350  Q
    |||||||||||  || |||| ||||||| || |||||||||||||||||||||||||    
T  23519645 aattttcttcactttctattgtcttcaacaaccttctaagaaccattggtcttcaat 23519701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 25778256 - 25778208
Alignment:
Q  21 ctttctaaatgaataaaagcgtgtgcaatggtctctatttttagtgcat 69  Q
    |||| |||||||||||||| |||||||| ||||||||||| ||||||||    
T  25778256 ctttataaatgaataaaagagtgtgcaaaggtctctatttatagtgcat 25778208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 359
Target Start/End: Original strand, 18300893 - 18300944
Alignment:
Q  308 tgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||| ||||||| || |||||||||||||||||| || ||||||||||||    
T  18300893 tgtattgtcttcaaaaaccttctaagaaccattggtatttaatcttcatatc 18300944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 25727788 - 25727850
Alignment:
Q  297 tttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    ||||||||  ||| ||| ||||||| || |||| ||||||||||| |||||||||||||||||    
T  25727788 tttcttcactttggattgtcttcaaaaaccttccaagaaccattgatcttcaatcttcatatc 25727850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 25736196 - 25736258
Alignment:
Q  297 tttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    ||||||||  ||| ||| ||||||| || |||| ||||||||||| |||||||||||||||||    
T  25736196 tttcttcactttggattgtcttcaaaaaccttccaagaaccattgatcttcaatcttcatatc 25736258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 12423779 - 12423847
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaat 350  Q
    |||||| | |||||||| |||||  ||||||| ||||||| || |||||||||||| ||| ||||||||    
T  12423779 gaacttgaaatgaatttccttcactttgtattgtcttcaacaaccttctaagaacctttgatcttcaat 12423847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 25730997 - 25730949
Alignment:
Q  21 ctttctaaatgaataaaagcgtgtgcaatggtctctatttttagtgcat 69  Q
    |||| |||||||||||||| || ||||| ||||||||||| ||||||||    
T  25730997 ctttataaatgaataaaagagtatgcaaaggtctctatttatagtgcat 25730949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 362
Target Start/End: Original strand, 31319499 - 31319555
Alignment:
Q  306 cttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatctct 362  Q
    |||| ||| ||||||| || |||||||||||||||| |||||| | |||||||||||    
T  31319499 cttgcattgtcttcaaaaaacttctaagaaccattgatcttcattattcatatctct 31319555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 291 - 358
Target Start/End: Complemental strand, 16634288 - 16634221
Alignment:
Q  291 atgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatat 358  Q
    ||||||||| ||||||||||||| ||||||| || |||||||||||||||||||||||| ||||||||    
T  16634288 atgaatttttttcatcttgtattttcttcaaaaaccttctaagaaccattggtcttcaaacttcatat 16634221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 11274194 - 11274271
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||| | ||||| |||| |||||||||||| |||||||  | ||||||||||||||||||||||||||||||||||    
T  11274194 gaacttgaaatgaaatttcatcatcttgtattgtcttcaaagaccttctaagaaccattggtcttcaatcttcatatc 11274271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 16622541 - 16622617
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||| | ||||||||||||||  ||||||| ||||||| || ||||||||||||| ||||||||||||||||||||    
T  16622541 gaacttgaaatgaattttcttcaatttgtattgtcttcaa-aaccttctaagaaccactggtcttcaatcttcatatc 16622617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 258 - 359
Target Start/End: Complemental strand, 18178375 - 18178275
Alignment:
Q  258 gttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcata 357  Q
    |||||||||| |||||| | ||| |||||| | ||||||||| ||||  |||||||||||||||  | |||| |||||| ||||||||||||||||||||    
T  18178375 gttcttccgtcttgaaa-gccttggaacttgagatgaattttattcaatttgtattatcttcaaagaccttccaagaacaattggtcttcaatcttcata 18178277  T
Q  358 tc 359  Q
    ||    
T  18178276 tc 18178275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 282 - 355
Target Start/End: Original strand, 19763750 - 19763823
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttca 355  Q
    |||||| | ||||||||||||||  ||||||||||||||| || |||||||||||| ||| |||||||||||||    
T  19763750 gaacttgaaatgaattttcttcactttgtattatcttcaaaaaccttctaagaacccttgatcttcaatcttca 19763823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 25368161 - 25368042
Alignment:
Q  19 aactttctaaatgaataaaagcgtgtgcaatggtctctatttttagtgcatcactgcata-ggggtttagaga-tgaaatttaggattttccactaaaaa 116  Q
    ||||||||||||||||||||  |||||||||||||||||||| |||||||| | | | ||  ||||| ||||| ||||| |  || |||||||| |||||    
T  25368161 aactttctaaatgaataaaatagtgtgcaatggtctctatttatagtgcatgattacgtacagggttaagagagtgaaaataggggttttccaccaaaaa 25368062  T
Q  117 tagcttggaaaacaagcaaa 136  Q
    | ||||| ||||||||||||    
T  25368061 tggcttgaaaaacaagcaaa 25368042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 7742477 - 7742553
Alignment:
Q  19 aactttctaaatgaataaaagcgtgtgcaatggtctctatttttagtgcatcactgcataggggtttagagatgaaa 95  Q
    |||||| | ||||| |||||| |||||||| ||||||||||| || ||||||| ||| |||||||| ||||| ||||    
T  7742477 aactttttgaatgattaaaagagtgtgcaagggtctctatttataatgcatcattgcttaggggttaagagaagaaa 7742553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 7742748 - 7742812
Alignment:
Q  296 ttttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatct 360  Q
    |||||||||  ||||||| |||||||  | |||||||||||||||| |||||| |||||||||||    
T  7742748 ttttcttcactttgtattgtcttcaaagaccttctaagaaccattgatcttcagtcttcatatct 7742812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 359
Target Start/End: Complemental strand, 26070747 - 26070647
Alignment:
Q  259 ttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatat 358  Q
    ||||||||| |||||||| ||| |||||| |  ||||||||||  | |||| ||| ||||||| || ||| || ||||||| | ||||||||||||||||    
T  26070747 ttcttccgtcttgaaatgccttggaacttgaactgaattttctctaacttgcattgtcttcaaaaaccttatacgaaccatagatcttcaatcttcatat 26070648  T
Q  359 c 359  Q
    |    
T  26070647 c 26070647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 362
Target Start/End: Original strand, 11997766 - 11997837
Alignment:
Q  291 atgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatctct 362  Q
    ||||||||| | || ||||||||||||| || || ||||||| || ||||| |||||| |||||||||||||    
T  11997766 atgaattttttccaacttgtattatctttaaaaaccttctaaaaatcattgatcttcattcttcatatctct 11997837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 360
Target Start/End: Complemental strand, 17027765 - 17027700
Alignment:
Q  294 aattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatct 360  Q
    |||||||||||  ||||||| |||||||||| |||||||||| ||||   |||||||||||||||||    
T  17027765 aattttcttcactttgtattgtcttcaagaaccttctaagaagcatt-aacttcaatcttcatatct 17027700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 360
Target Start/End: Complemental strand, 30072366 - 30072288
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatct 360  Q
    |||||| | ||||| ||||||||  ||||||| |||| || || ||| |||||||||||  ||||||||||||||||||    
T  30072366 gaacttgaaatgaaatttcttcactttgtattgtctttaaaaaccttttaagaaccattaatcttcaatcttcatatct 30072288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 360
Target Start/End: Original strand, 18452685 - 18452754
Alignment:
Q  291 atgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatct 360  Q
    ||||||||||||||  ||||||| | || || || ||| |||||||||||| |||||||| |||||||||    
T  18452685 atgaattttcttcactttgtattgttttaaaaaaccttataagaaccattgatcttcaattttcatatct 18452754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 26329934 - 26330010
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||| | ||||||||||||||  ||||||| |||| || || |||||||| |||||| | ||||||||||||||||    
T  26329934 gaacttgaaatgaattttcttcactttgtattgtcttaaaaaaccttctaaggaccatt-gacttcaatcttcatatc 26330010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 25594565 - 25594633
Alignment:
Q  291 atgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    ||||||||||||||  ||| ||||||| ||| || ||||||| | |||||| | |||||||||||||||    
T  25594565 atgaattttcttcactttgcattatctacaaaaaccttctaatatccattgatattcaatcttcatatc 25594633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 226 - 359
Target Start/End: Original strand, 14424621 - 14424754
Alignment:
Q  226 caaattttgcactttttcaccctttttcggttgttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaat 325  Q
    |||||||||||  ||||  |||||||| |   |||||||||| ||| ||| |||||||||| || ||||||||||||||  ||| ||| | ||||| ||     
T  14424621 caaattttgcatcttttgtcccttttttgagagttcttccgtcttgcaatatcttagaactataaatgaattttcttcacattgaattgtgttcaaaaac 14424720  T
Q  326 cttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||||||||||||| |||||||||||| ||||    
T  14424721 cttctaagaaccattgatcttcaatcttcttatc 14424754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 16052141 - 16052218
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||| | ||||||||||||||| ||||||| ||||||| || |||||||||| |||||||||| ||||||||||||    
T  16052141 gaacttgaaatgaattttcttcattttgtattgtcttcaaaaaccttctaagaatcattggtctttaatcttcatatc 16052218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 5570013 - 5570081
Alignment:
Q  291 atgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    ||||||||||||||||||||||| |||| || || ||||||||||||||||||||| || |||||||||    
T  5570013 atgaattttcttcatcttgtattgtctttaaaaagcttctaagaaccattggtctttaaacttcatatc 5570081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 359
Target Start/End: Complemental strand, 5154031 - 5153931
Alignment:
Q  259 ttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatat 358  Q
    ||||||||| ||| |||||||| |||||| | ||||||||| ||||| || |||| ||||||| || |||| || || ||||| ||||||||||||||||    
T  5154031 ttcttccgtcttgcaatgtcttggaacttgaaatgaattttattcatgttatattgtcttcaaaaaccttccaataatcattgatcttcaatcttcatat 5153932  T
Q  359 c 359  Q
    |    
T  5153931 c 5153931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 359
Target Start/End: Original strand, 28291978 - 28292042
Alignment:
Q  295 attttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    ||||||||||| ||||||| |||||||  | |||||||||||||||  |||||||||||||||||    
T  28291978 attttcttcattttgtattgtcttcaaagaccttctaagaaccattaatcttcaatcttcatatc 28292042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 350
Target Start/End: Original strand, 13081808 - 13081867
Alignment:
Q  291 atgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaat 350  Q
    ||||||||||||||| ||||||| ||||||| || |||||||||||| ||| ||||||||    
T  13081808 atgaattttcttcattttgtattgtcttcaacaaccttctaagaacccttgatcttcaat 13081867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 24120474 - 24120407
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaa 349  Q
    |||||| | |||||||||||||||||| |||||||||| | || |||||||||| ||||||| |||||    
T  24120474 gaacttgaaatgaattttcttcatcttttattatcttcgaaaaccttctaagaaacattggtattcaa 24120407  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 359
Target Start/End: Original strand, 6888070 - 6888134
Alignment:
Q  295 attttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||||||| |||||||| |||||||  |  || |||||||||||| |||||||||||||||||    
T  6888070 attttcttcaacttgtattgtcttcaaagacattttaagaaccattgatcttcaatcttcatatc 6888134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 16054544 - 16054476
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaat 350  Q
    |||||| | ||||||||||||||  ||||||| ||||||| || |||||||||||| ||| ||||||||    
T  16054544 gaacttgaaatgaattttcttcactttgtattttcttcaacaaccttctaagaacccttgatcttcaat 16054476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 24696807 - 24696755
Alignment:
Q  307 ttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    ||||||| ||||||| || ||||||||||| | ||||||||||||||||||||    
T  24696807 ttgtattttcttcaaaaaccttctaagaacaagtggtcttcaatcttcatatc 24696755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 28902339 - 28902275
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtctt 346  Q
    |||||| | ||||||||| ||||  ||||||| ||||||| || |||||||||||||||||||||    
T  28902339 gaacttaaaatgaattttattcactttgtattgtcttcaataaccttctaagaaccattggtctt 28902275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 30544248 - 30544204
Alignment:
Q  22 tttctaaatgaataaaagcgtgtgcaatggtctctatttttagtg 66  Q
    |||||||||||||||||| |||||||||| ||||||||| |||||    
T  30544248 tttctaaatgaataaaagagtgtgcaatgatctctatttatagtg 30544204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 336
Target Start/End: Original strand, 27097641 - 27097720
Alignment:
Q  257 tgttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaac 336  Q
    ||||||||||| ||| |||| ||| |||||| |  ||||||||||||| |||||||| |||||||  | |||||||||||    
T  27097641 tgttcttccgtcttgcaatgccttggaacttgaattgaattttcttcaacttgtattgtcttcaaagaccttctaagaac 27097720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 359
Target Start/End: Complemental strand, 11437695 - 11437593
Alignment:
Q  257 tgttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcat 356  Q
    ||||||||||| ||| ||||  || |||||| | ||||||| ||||||   |||||| |||||||   |||||||||||||||||  ||||||| |||||    
T  11437695 tgttcttccgtcttgcaatgctttggaacttcaaatgaattatcttcactctgtattgtcttcaaatgtcttctaagaaccattgaacttcaattttcat 11437596  T
Q  357 atc 359  Q
    |||    
T  11437595 atc 11437593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 359
Target Start/End: Original strand, 30850955 - 30851041
Alignment:
Q  273 aatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||| ||| |||||| | || |||||||||||  ||||||||| |||||  |  ||||||||||| ||| |||||||||||||||||    
T  30850955 aatgacttggaacttgaaattaattttcttcactttgtattatattcaaagacattctaagaaccgttgatcttcaatcttcatatc 30851041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 18771451 - 18771414
Alignment:
Q  22 tttctaaatgaataaaagcgtgtgcaatggtctctatt 59  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  18771451 tttctaaatgaataaaagagtgtgcaagggtctctatt 18771414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 359
Target Start/End: Complemental strand, 32239582 - 32239461
Alignment:
Q  238 tttttcaccctttttcggttgttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaacc 337  Q
    ||||| |||||||||||   ||| ||| || ||| |||| |||  ||||| | ||||||||||||||  || |||| |||| ||||| ||| ||| ||||    
T  32239582 tttttgaccctttttcgcccgtttttctgtcttgcaatgccttgaaacttgaaatgaattttcttcactttttattgtctttaagaaccttataaaaacc 32239483  T
Q  338 attggtcttcaatcttcatatc 359  Q
    ||||  ||||||||||||||||    
T  32239482 attgaacttcaatcttcatatc 32239461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 359
Target Start/End: Original strand, 13583409 - 13583461
Alignment:
Q  307 ttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    ||||||| |||||||  ||||||||||||||||||  |||||||| |||||||    
T  13583409 ttgtattgtcttcaaatatcttctaagaaccattgaacttcaatcatcatatc 13583461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 14184344 - 14184308
Alignment:
Q  118 agcttggaaaacaagcaaaaggcacctcctggccgtc 154  Q
    |||||||||||||||||||||||||||| | ||||||    
T  14184344 agcttggaaaacaagcaaaaggcacctcttagccgtc 14184308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 27085163 - 27085215
Alignment:
Q  21 ctttctaaatgaataaaagcgtgtgcaatggtctctatttttagtgcatcact 73  Q
    |||| |||||||||||||| |||||||  ||||||||||| |||| |||||||    
T  27085163 ctttttaaatgaataaaagagtgtgcaggggtctctatttatagtacatcact 27085215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 16970700 - 16970635
Alignment:
Q  294 aattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||||||||||||||||| ||||||| || |||||||||||| ||||||||||| |||||||||    
T  16970700 aattttcttcatcttgtattttcttcaaaaaccttctaagaaccgttggtcttcaaacttcatatc 16970635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 19219084 - 19219152
Alignment:
Q  291 atgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    ||||||||| ||||  ||||||| ||||||| || |||||||||||||||| |||||||||||||||||    
T  19219084 atgaattttattcactttgtattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcatatc 19219152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 25883353 - 25883285
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaat 350  Q
    |||||| | ||||||||||||||  ||||||| ||||||| || |||||||||||| ||| ||||||||    
T  25883353 gaacttgaaatgaattttcttcactttgtattgtcttcaacaaccttctaagaacccttgatcttcaat 25883285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 22992279 - 22992393
Alignment:
Q  22 tttctaaatgaataaaagcgtgtgcaatggtctctatttttagtgcatcactgcataggggtttagagatgaaatttagg-attttccactaaaaatagc 120  Q
    ||||||||| || ||||| ||||| ||  |||||||||| |||||||||| | | |||||||||||||| |||| || || ||||||||   ||  ||||    
T  22992279 tttctaaatcaacaaaagagtgtggaagagtctctatttatagtgcatcattacgtaggggtttagagaagaaaattgggaattttcca-acaatctagc 22992377  T
Q  121 ttggaaaacaagcaaa 136  Q
    ||||||||||||||||    
T  22992378 ttggaaaacaagcaaa 22992393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 341
Target Start/End: Complemental strand, 18474463 - 18474361
Alignment:
Q  239 ttttcaccctttttcggttgttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaacca 338  Q
    |||| ||||||||||| | |||||| ||| ||| ||||  || |||||| | ||||||||||||||  ||||||| |||||||  | |||||||| ||||    
T  18474463 tttttaccctttttcgctcgttctttcgtcttgcaatgcattggaacttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtacca 18474364  T
Q  339 ttg 341  Q
    |||    
T  18474363 ttg 18474361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 359
Target Start/End: Original strand, 21828984 - 21829074
Alignment:
Q  269 ttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||||| ||| |||||| | |||||| ||||| | ||| |||| |||||||  | |||| | ||||||||| |||||||||||||||||    
T  21828984 ttgaaatgccttggaacttaaaatgaatattctttaacttatattgtcttcaaagaccttcgatgaaccattgatcttcaatcttcatatc 21829074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 22489678 - 22489720
Alignment:
Q  27 aaatgaataaaagcgtgtgcaatggtctctatttttagtgcat 69  Q
    ||||||||||||  |||||||||||||||||||| ||||||||    
T  22489678 aaatgaataaaatagtgtgcaatggtctctatttatagtgcat 22489720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 33578277 - 33578227
Alignment:
Q  21 ctttctaaatgaataaaagcgtgtgcaatggtctctatttttagtgcatca 71  Q
    ||||||||||||||||||| ||||||||  |||||||||| ||||| ||||    
T  33578277 ctttctaaatgaataaaagtgtgtgcaagtgtctctatttatagtgtatca 33578227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 359
Target Start/End: Complemental strand, 21018127 - 21018051
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||| | |||||||| |||||| ||||||||||||||| ||  || ||  ||||||||||||||||| ||||||||    
T  21018127 gaacttgaaatgaatttccttcattttgtattatcttcaaaaaagttatagaaaccattggtcttcaat-ttcatatc 21018051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 346
Target Start/End: Complemental strand, 18066038 - 18065982
Alignment:
Q  291 atgaattttcttcatcttgtattatcttcaagaatctt-ctaagaaccattggtctt 346  Q
    ||||||||||||||  ||||||| ||||||| || ||| ||||||||||||||||||    
T  18066038 atgaattttcttcactttgtattttcttcaaaaaactttctaagaaccattggtctt 18065982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 26298298 - 26298186
Alignment:
Q  21 ctttctaaatgaataaaagcgtgtgcaatggtctctatttttagtgcatcactgcataggggtttagagatg-aaatttaggattttccactaaaaatag 119  Q
    |||||| ||| |||||||| ||||||||  |||||||||| || ||||| | | | |||||||| ||||| | ||| | ||| |||| ||| ||||| ||    
T  26298298 ctttctcaattaataaaagagtgtgcaagagtctctatttataatgcatgattccttaggggttaagagagggaaaataaggttttttcaccaaaaacag 26298199  T
Q  120 cttggaaaacaag 132  Q
    |||||||||||||    
T  26298198 cttggaaaacaag 26298186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 258 - 357
Target Start/End: Original strand, 228027 - 228125
Alignment:
Q  258 gttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcata 357  Q
    |||||||||| ||| |||||||| |||||| | ||||||||||||||  ||||||| |||||||  | ||||||||||||||| ||||||||| ||||||    
T  228027 gttcttccgtcttgcaatgtcttggaacttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagaaccatt-gtcttcaatattcata 228125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 262 - 359
Target Start/End: Original strand, 26499691 - 26499788
Alignment:
Q  262 ttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||| ||| |||| |||  ||||| | |||||||||||| |  ||||||| ||||||| || |||||||||||||||| |||||||||||||||||    
T  26499691 ttccgtcttgcaatgccttgaaacttgaaatgaattttctttactttgtattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcatatc 26499788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 368
Target Start/End: Original strand, 14924260 - 14924368
Alignment:
Q  258 gttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcata 357  Q
    |||||||||| ||| |||| ||| |||| | | |||||||||  |||||||||||| ||||||| ||  ||| | ||||||||| |||||||| ||||||    
T  14924260 gttcttccgtcttgcaatgccttcgaacctgaaatgaatttt--tcatcttgtattgtcttcaaaaacattccatgaaccattgatcttcaattttcata 14924357  T
Q  358 tctctgcttct 368  Q
    |||||| ||||    
T  14924358 tctctggttct 14924368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 359
Target Start/End: Complemental strand, 33638325 - 33638259
Alignment:
Q  293 gaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    ||||||| ||||  |||||||||||||||  | ||| |||||||||||| |||||||||||||||||    
T  33638325 gaattttattcactttgtattatcttcaaagaccttataagaaccattgatcttcaatcttcatatc 33638259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 359
Target Start/End: Complemental strand, 24618117 - 24618056
Alignment:
Q  298 ttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    ||||||| |||||||| |||| ||  |||||||||||| ||||| |||||||||||||||||    
T  24618117 ttcttcaacttgtattgtctttaaagatcttctaagaatcattgatcttcaatcttcatatc 24618056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 359
Target Start/End: Complemental strand, 30355567 - 30355490
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||| | ||||||||| ||||  || |||| ||||||| || ||||||||||| |||| |||||||||||||||||    
T  30355567 gaacttgaaatgaattttattcactttttattgtcttcaaaaaccttctaagaacgattgatcttcaatcttcatatc 30355490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 359
Target Start/End: Original strand, 33638381 - 33638446
Alignment:
Q  294 aattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||| ||||  |||||||||||||||  | ||| |||||||||||| |||||||||||||||||    
T  33638381 aattttattcactttgtattatcttcaaagaccttataagaaccattgatcttcaatcttcatatc 33638446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 359
Target Start/End: Complemental strand, 16439745 - 16439631
Alignment:
Q  245 ccctttttcggttgttcttccgtgttgaaatgtcttagaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtc 344  Q
    ||||||||||   |||||||||| || ||||||||| || |||   ||||||||||   | |||||||| ||||||| |   ||||||||||||||| ||    
T  16439745 ccctttttcgagcgttcttccgtcttaaaatgtcttggatcttgcgatgaattttcccgaacttgtattttcttcaaaaccattctaagaaccattgatc 16439646  T
Q  345 ttcaatcttcatatc 359  Q
    |||| ||||||||||    
T  16439645 ttcattcttcatatc 16439631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 12971943 - 12972008
Alignment:
Q  19 aactttctaaatgaataaaagcgtgtgcaatggtctctatttttagtgcatcactgcataggggtt 84  Q
    |||||| | |||||||||||| || ||||| ||||||||||| |||||||||| | | ||||||||    
T  12971943 aactttattaatgaataaaagagtctgcaagggtctctatttatagtgcatcattacgtaggggtt 12972008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 15318564 - 15318451
Alignment:
Q  32 aataaaagcgtgtgcaatggtctctatttttagtgcatcactgcataggggtttagagatgaaattta-ggattttccactaaaaatagcttggaaaaca 130  Q
    |||||||| ||| ||||  |||||||||  |||||||||| | | || ||||| | ||||||||  || || |||||||||||||  |||||| ||||||    
T  15318564 aataaaagtgtgcgcaagagtctctattcatagtgcatcattacgtatgggttaaaagatgaaaaataaggtttttccactaaaatcagcttgaaaaaca 15318465  T
Q  131 agcaaaaggcacct 144  Q
    | ||||||||||||    
T  15318464 aacaaaaggcacct 15318451  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 359
Target Start/End: Original strand, 24507319 - 24507383
Alignment:
Q  294 aattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||||||||  ||||||| ||||||  || ||||||| ||||||| ||||||||||||||||||    
T  24507319 aattttcttcactttgtattttcttcataaaacttctaacaaccatt-gtcttcaatcttcatatc 24507383  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 15575174 - 15575106
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaat 350  Q
    |||||| | ||||||||||||||  ||||||| |||||||  | |||||||||||| ||| ||||||||    
T  15575174 gaacttgaaatgaattttcttcactttgtattgtcttcaacgaccttctaagaacccttgatcttcaat 15575106  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 17860313 - 17860381
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaat 350  Q
    |||||| | ||||||||||||||  ||||||| ||| ||| || ||||||||||||||||  |||||||    
T  17860313 gaacttgaaatgaattttcttcactttgtattgtctacaaaaaccttctaagaaccattgtccttcaat 17860381  T

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Target: scaffold0171 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 359
Target Start/End: Complemental strand, 6431 - 6369
Alignment:
Q  296 ttttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||||||  ||||||| ||||||| ||||||||| |||||||||||||||||| ||||||||    
T  6431 ttttcttcactttgtattttcttcaaaaatcttctaggaaccattggtcttcaat-ttcatatc 6369  T

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Target: scaffold0171; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 21623 - 21571
Alignment:
Q  307 ttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    ||||||| |||| || || |||||||||||||||| |||||||||||||||||    
T  21623 ttgtattgtctttaaaaaccttctaagaaccattgatcttcaatcttcatatc 21571  T

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Target: scaffold0188 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 359
Target Start/End: Original strand, 26830 - 26896
Alignment:
Q  293 gaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    ||||||||||||  ||||||| ||||||||||  |||||||||||||||  ||||||| ||||||||    
T  26830 gaattttcttcactttgtattgtcttcaagaactttctaagaaccattgaacttcaattttcatatc 26896  T

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Target: scaffold0362 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 7869 - 7799
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatct 352  Q
    |||||| | |||||||||||| |  ||||| | ||||||| || ||||||||||||||||| |||||||||    
T  7869 gaacttgaaatgaattttcttgactttgtactgtcttcaacaaccttctaagaaccattggccttcaatct 7799  T

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Target: scaffold0337 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 2046 - 1982
Alignment:
Q  294 aattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||||||||  ||||||| ||||||  || ||||||| ||||||| ||||||||||||||||||    
T  2046 aattttcttcactttgtattttcttcataaaacttctaacaaccatt-gtcttcaatcttcatatc 1982  T

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Target: scaffold0282 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 22478 - 22554
Alignment:
Q  282 gaactttatatgaattttcttcatcttgtattatcttcaagaatcttctaagaaccattggtcttcaatcttcatatc 359  Q
    |||||| | |||||||||||||| |||||||| |||| || || |||||| |||||||| | ||||| ||||||||||    
T  22478 gaacttgaaatgaattttcttcaccttgtattgtcttaaaaaaccttctatgaaccatt-gacttcattcttcatatc 22554  T

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