View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8789_high_3 (Length: 346)

Name: NF8789_high_3
Description: NF8789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8789_high_3
NF8789_high_3
[»] chr1 (4 HSPs)
chr1 (1-333)||(40803004-40803336)
chr1 (189-320)||(37920960-37921091)
chr1 (190-317)||(34484620-34484747)
chr1 (208-320)||(40705437-40705549)
[»] chr5 (2 HSPs)
chr5 (184-317)||(20856139-20856272)
chr5 (184-317)||(20849079-20849212)


Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 40803336 - 40803004
Alignment:
Q  1 tcttcctctatcagcttcttctcaataaattcatccaaatctttcaattcttcagcagtgaggttgtccaccaaatttttgttttgcatgcactcatgca 100  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40803336 tcttcctctttcagcttcttctcaataaactcatccaaatctttcaattcttcagcagtgaggttgtccaccaaatttttgttttgcatgcactcatgca 40803237  T
Q  101 taagcagatctatctttttctcaggtttcttgttttccaactttcttagccggtctctagctttagcaatattttgcatgattaaaccctcttggttcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40803236 taagcagatctatctttttctcaggtttcttgttttccaactttcttagccggtctctagctttagcaatattttgcatgattaaaccctcttggttcaa 40803137  T
Q  201 attcttggtttcatctttagcagatgaattatgatacctctcaaacaccttttttgctccctctcgatctggccagacctctatttgagaattaaaagga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40803136 attcttggtttcatctttagcagatgaattatgatacctctcaatcaccttttttgctccctctcgatctggccagacctctatttgagaattaaaagga 40803037  T
Q  301 tttgaaataatagcacaagcagaaactccacag 333  Q
    |||||||||||||||||||||||||||||||||    
T  40803036 tttgaaataatagcacaagcagaaactccacag 40803004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 189 - 320
Target Start/End: Original strand, 37920960 - 37921091
Alignment:
Q  189 ctcttggttcaaattcttggtttcatctttagcagatgaattatgatacctctcaaacaccttttttgctccctctcgatctggccagacctctatttga 288  Q
    ||||||||||| |||||| |||||||||||  | |||||||| ||||||||||||| ||| | ||| ||  ||||| ||| |||||| |||||||||| |    
T  37920960 ctcttggttcacattctttgtttcatctttcaccgatgaattttgatacctctcaatcacatgtttagcctcctctagatttggccacacctctatttta 37921059  T
Q  289 gaattaaaaggatttgaaataatagcacaagc 320  Q
    |||| ||||||||| ||||| |||||||||||    
T  37921060 gaatcaaaaggattagaaattatagcacaagc 37921091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 317
Target Start/End: Original strand, 34484620 - 34484747
Alignment:
Q  190 tcttggttcaaattcttggtttcatctttagcagatgaattatgatacctctcaaacaccttttttgctccctctcgatctggccagacctctatttgag 289  Q
    |||||||||| ||||||  | ||||||||   | |||| || ||||||||||||| ||||| |||  |||| ||| ||| |||||| |||||| ||| ||    
T  34484620 tcttggttcacattctttttatcatctttcatatatgatttctgatacctctcaagcacctgtttgactccatctagatttggccacacctctgttttag 34484719  T
Q  290 aattaaaaggatttgaaataatagcaca 317  Q
    ||| ||||||||  ||||| ||||||||    
T  34484720 aatcaaaaggatcggaaattatagcaca 34484747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 320
Target Start/End: Complemental strand, 40705549 - 40705437
Alignment:
Q  208 gtttcatctttagcagatgaattatgatacctctcaaacaccttttttgctccctctcgatctggccagacctctatttgagaattaaaaggatttgaaa 307  Q
    |||||||||||  ||||| |||| ||| |||||||||  | ||| || ||||| ||| |||  |||||||||||| |  |||||| ||||||| | ||||    
T  40705549 gtttcatctttcacagataaattttgaaacctctcaattatcttattggctccttctggatgcggccagacctctgtccgagaatcaaaaggactggaaa 40705450  T
Q  308 taatagcacaagc 320  Q
    | |||||||||||    
T  40705449 ttatagcacaagc 40705437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 184 - 317
Target Start/End: Original strand, 20856139 - 20856272
Alignment:
Q  184 aaaccctcttggttcaaattcttggtttcatctttagcagatgaattatgatacctctcaaacaccttttttgctccctctcgatctggccagacctcta 283  Q
    |||| ||||||||||| |||||| |||||||||||  | ||||| || || ||||| |||| ||||| | | || |||||| |||||||||| ||||||     
T  20856139 aaactctcttggttcatattctttgtttcatctttcactgatgagttctggtacctttcaatcacctgtctggccccctctagatctggccacacctctg 20856238  T
Q  284 tttgagaattaaaaggatttgaaataatagcaca 317  Q
    |||  ||| |||||||||| ||||| ||||||||    
T  20856239 ttttggaactaaaaggattggaaattatagcaca 20856272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 317
Target Start/End: Original strand, 20849079 - 20849212
Alignment:
Q  184 aaaccctcttggttcaaattcttggtttcatctttagcagatgaattatgatacctctcaaacaccttttttgctccctctcgatctggccagacctcta 283  Q
    |||| ||||||||||| |||||| |||||||||||  | ||||| || || |||||||||| ||||| | | || | |||| |||||||||| || |||     
T  20849079 aaactctcttggttcacattctttgtttcatctttcactgatgagttctggtacctctcaatcacctgtctggccctctctagatctggccacacttctg 20849178  T
Q  284 tttgagaattaaaaggatttgaaataatagcaca 317  Q
    |||  ||| |||||||||| ||||| ||||||||    
T  20849179 ttttggaactaaaaggattggaaattatagcaca 20849212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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