View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8789_high_4 (Length: 288)

Name: NF8789_high_4
Description: NF8789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8789_high_4
NF8789_high_4
[»] chr6 (12 HSPs)
chr6 (18-279)||(14025595-14025856)
chr6 (18-268)||(13932673-13932923)
chr6 (31-271)||(14047652-14047892)
chr6 (32-278)||(14110791-14111037)
chr6 (28-272)||(13874800-13875044)
chr6 (31-271)||(13892507-13892747)
chr6 (31-279)||(14015464-14015714)
chr6 (31-279)||(13472500-13472748)
chr6 (36-271)||(13862338-13862573)
chr6 (31-269)||(14084991-14085229)
chr6 (120-279)||(13912137-13912296)
chr6 (31-108)||(13928824-13928901)


Alignment Details
Target: chr6 (Bit Score: 161; Significance: 7e-86; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 14025856 - 14025595
Alignment:
Q  18 aagtacctgaaggatcttgatatttcgaaggctggaatttcagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaaaatca 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||    
T  14025856 aagtacctgcaggatcttgatatttcgaaggctggaatttcagataatgttccagagtggttttgggctaaactatcatcacaatggtgcaacaacatca 14025757  T
Q  118 acgtttcaaacaataatctcaaaggattaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccat 217  Q
    || ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||        |||||||||||||||||| |||||||| || ||    
T  14025756 acatttcaaacaataatctcaaaggattaattccaaatcttcaagtcaaaaatcgttgttctgttttatctctttcatcaaatgaatttgaagggcctat 14025657  T
Q  218 tccaccatttctacgaggttctgggtttattgatctgtccaaaaacaaattctctgcttctc 279  Q
    |||||||||||||  |||||||    ||| |||| ||||||||||||||||||||| |||||    
T  14025656 tccaccatttctaaaaggttctacagttactgatttgtccaaaaacaaattctctgattctc 14025595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 13932923 - 13932673
Alignment:
Q  18 aagtacctgaaggatcttgatatttcgaaggctggaatttcagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaaaatca 117  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||    
T  13932923 aagtacctgctggatcttgatatttcgaaggctggaatttcagataatgttccagagtggttttgggctaaactatcatcacaagaatgcaacagcatca 13932824  T
Q  118 acgtttcaaacaataatctcaaaggattaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccat 217  Q
    |  |||||||||||||||||||||| | |||||||||||||||||| |||||||| |||        |||||||||||||||||| |||||||| || ||    
T  13932823 atatttcaaacaataatctcaaaggttcaattccaaatcttcaagtcaaaaatcactgttctcttttatctctttcatcaaatgaatttgaagggcctat 13932724  T
Q  218 tccaccatttctacgaggttctgggtttattgatctgtccaaaaacaaatt 268  Q
    |||| ||||| ||| ||||||||   |||||||| ||||||||||||||||    
T  13932723 tccagcatttttacaaggttctgcacttattgatttgtccaaaaacaaatt 13932673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 31 - 271
Target Start/End: Complemental strand, 14047892 - 14047652
Alignment:
Q  31 atcttgatatttcgaaggctggaatttcagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaaaatcaacgtttcaaacaa 130  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| || ||| ||| ||||||    
T  14047892 atcttgatatttcgaatgctggaatttcagataatgttccagagtggttttgggctaaactatcatcaccagagtgcagcaacatgaacattttaaacaa 14047793  T
Q  131 taatctcaaaggattaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttcta 230  Q
    ||||||||||||||||||||||||||||||||  |||| ||| |||        |||||||||||||||||| ||||||||  ||| |||||| ||||||    
T  14047792 taatctcaaaggattaattccaaatcttcaagccaaaagtcaatgttcttttttatctctttcatcaaatgaatttgaagggtccactccaccttttcta 14047693  T
Q  231 cgaggttctgggtttattgatctgtccaaaaacaaattctc 271  Q
    | ||||||||| || |||||||| |||||||| ||||||||    
T  14047692 ctaggttctggattaattgatctttccaaaaataaattctc 14047652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 32 - 278
Target Start/End: Complemental strand, 14111037 - 14110791
Alignment:
Q  32 tcttgatatttcgaaggctggaatttcagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaaaatcaacgtttcaaacaat 131  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||  |  ||||||||||||||||||    
T  14111037 tcttgatatttctaatgctggaatttcagataatgttccggagtggttttgggctaaactatcatcacaaaagtgcaggagcatcaacgtttcaaacaat 14110938  T
Q  132 aatctcaaaggattaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctac 231  Q
    |||||||||||| |||||||||||||||||||||||||| ||||         ||||||||||| |||||| |||||||| |||||||||||||||||||    
T  14110937 aatctcaaaggaataattccaaatcttcaagtaaaaaattattgctctagtttatctctttcattaaatgaatttgaagggcccattccaccatttctac 14110838  T
Q  232 gaggttctgggtttattgatctgtccaaaaacaaattctctgcttct 278  Q
     ||||||     ||||||| |||||||||||||| ||||||| ||||    
T  14110837 aaggttcccatgttattgacctgtccaaaaacaagttctctgattct 14110791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 28 - 272
Target Start/End: Original strand, 13874800 - 13875044
Alignment:
Q  28 aggatcttgatatttcgaaggctggaatttcagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaaaatcaacgtttcaaa 127  Q
    ||||| |||||||||| ||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| ||||| |    
T  13874800 aggatattgatatttctaattctggaatttcagataatgttcccgagtggttttgggctaaactatcatcacaagagtgcaagacaatcaacatttcata 13874899  T
Q  128 caataatctcaaaggattaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccattt 227  Q
    ||| |||||||||||||||||||| |||||||| |||||||||||||||        ||||||| |||||||| | ||||||||  ||||||||||||||    
T  13874900 caacaatctcaaaggattaattccgaatcttcatgtaaaaaatcattgttcttttttatctcttgcatcaaatcaatttgaaggctccattccaccattt 13874999  T
Q  228 ctacgaggttctgggtttattgatctgtccaaaaacaaattctct 272  Q
    ||  |||||||||  | ||||||| ||||||||||||||||||||    
T  13875000 ctcagaggttctgtatctattgatttgtccaaaaacaaattctct 13875044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 31 - 271
Target Start/End: Original strand, 13892507 - 13892747
Alignment:
Q  31 atcttgatatttcgaaggctggaatttcagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaaaatcaacgtttcaaacaa 130  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||  |  |||||| ||||||||||    
T  13892507 atcttgatatttctaatgctggaatttcagataatgttccagagtggttttgggctaaattatcattaaaagagtgcagaagcatcaacatttcaaacaa 13892606  T
Q  131 taatctcaaaggattaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttcta 230  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||        |||||||||||||||||| |||||||| || |||||||||||||||    
T  13892607 taatctcaaaggattaattccaaatcttcaagtcaaaaattattgttctattttatctctttcatcaaatgaatttgaagggcctattccaccatttcta 13892706  T
Q  231 cgaggttctgggtttattgatctgtccaaaaacaaattctc 271  Q
      |||||||    |||||||  |||||||||||||||||||    
T  13892707 aaaggttctacacttattgacttgtccaaaaacaaattctc 13892747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 31 - 279
Target Start/End: Complemental strand, 14015714 - 14015464
Alignment:
Q  31 atcttgatatttcgaaggctggaatttcagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaaaatcaacgtttcaaacaa 130  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||   |||||| ||||||||||    
T  14015714 atcttgatatttcgaatgctggaatttcagataatattccagagtggttttgggctaaactatcatcacaagagtgctaccgcatcaacatttcaaacaa 14015615  T
Q  131 taatctcaaaggattaattccaaatcttcaagtaaaaaatca--ttgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttc 228  Q
    |||||||||||| | |||||||||||||||||| |||| | |  || |        |||||||||||||||||| |||||||| || |||||| ||||||    
T  14015614 taatctcaaaggttcaattccaaatcttcaagtcaaaattaattttttttttttatatctctttcatcaaatgaatttgaagggcctattccagcatttc 14015515  T
Q  229 tacgaggttctgggtttattgatctgtccaaaaacaaattctctgcttctc 279  Q
    ||| ||||||||   |||||||| ||||||||||||||||||||| |||||    
T  14015514 tacaaggttctgaacttattgatttgtccaaaaacaaattctctgattctc 14015464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 31 - 279
Target Start/End: Original strand, 13472500 - 13472748
Alignment:
Q  31 atcttgatatttcgaaggctggaatttcagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaaaatcaacgtttcaaacaa 130  Q
    ||||||||||||| || | |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||   | ||||||| ||||  | ||    
T  13472500 atcttgatatttctaatggtggaatttcagataatgttccagagtggttttggtctaaactatcatcccaagactgctctagaatcaacatttcctataa 13472599  T
Q  131 taatctcaaaggattaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttcta 230  Q
     |||||||||||||||||||||||||||||||||||||||||||||        || ||||||||||||||| ||||||||  |||||||||||||||||    
T  13472600 caatctcaaaggattaattccaaatcttcaagtaaaaaatcattgttcttttttatatctttcatcaaatgaatttgaagggtccattccaccatttcta 13472699  T
Q  231 cgaggttctgggtttattgatctgtccaaaaacaaattctctgcttctc 279  Q
     ||||||||   |||||||||||||||||||| || ||||||| |||||    
T  13472700 agaggttcttcatttattgatctgtccaaaaataagttctctgattctc 13472748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 36 - 271
Target Start/End: Original strand, 13862338 - 13862573
Alignment:
Q  36 gatatttcgaaggctggaatttcagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaaaatcaacgtttcaaacaataatc 135  Q
    |||||||| || |||| |||||||||||||||||| ||||||||||||| ||| |||||||  |||  |||||| | ||| ||| |||||||||||||||    
T  13862338 gatatttctaatgctgaaatttcagataatgttcctgagtggttttgggataatctatcattgcaaatgtgcaatacaataaacatttcaaacaataatc 13862437  T
Q  136 tcaaaggattaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctacgagg 235  Q
    | ||||||| |||||||||| |  ||||||||||||| |||        |||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  13862438 ttaaaggatcaattccaaatttaaaagtaaaaaatcactgttctcttttatctctttcatcaaatgattttgaagggcccattccaccatttctacgagg 13862537  T
Q  236 ttctgggtttattgatctgtccaaaaacaaattctc 271  Q
    ||||||  |||||||||| || ||||| ||||||||    
T  13862538 ttctggacttattgatctatcgaaaaataaattctc 13862573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 31 - 269
Target Start/End: Complemental strand, 14085229 - 14084991
Alignment:
Q  31 atcttgatatttcgaaggctggaatttcagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaaaatcaacgtttcaaacaa 130  Q
    ||||||||||||| || |||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||  | ||||||| ||||  ||||    
T  14085229 atcttgatatttctaatgctggagtttcagataatattccagagtggttttgggcaaaactatcatcacaagagtgcaggacaatcaacctttcttacaa 14085130  T
Q  131 taatctcaaaggattaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttcta 230  Q
     ||| ||||||||| |||||| ||||| ||  ||| |||| |||||        || ||| ||||||||||| |||||||| |||||||||||||||||     
T  14085129 caatttcaaaggatcaattccgaatctccacataagaaattattgttcttttttatttctgtcatcaaatgaatttgaaggtcccattccaccatttctt 14085030  T
Q  231 cgaggttctgggtttattgatctgtccaaaaacaaattc 269  Q
     |||||||      |||||||||||||||||| ||||||    
T  14085029 agaggttccataaatattgatctgtccaaaaataaattc 14084991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 120 - 279
Target Start/End: Complemental strand, 13912296 - 13912137
Alignment:
Q  120 gtttcaaacaataatctcaaaggattaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattc 219  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||        ||| |||||||||||||| |||||||| |||||||    
T  13912296 gtttcaaacaataatctcaaaggcttaattccaaatcttcaagtaaaaaatctttgttctgttttatcactttcatcaaatgaatttgaagggcccattc 13912197  T
Q  220 caccatttctacgaggttctgggtttattgatctgtccaaaaacaaattctctgcttctc 279  Q
    ||||||||||   |||||||    |||||||| ||||||||||||| ||||||| |||||    
T  13912196 caccatttctcaaaggttctacagttattgatttgtccaaaaacaagttctctgattctc 13912137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 13928901 - 13928824
Alignment:
Q  31 atcttgatatttcgaaggctggaatttcagataatgttccagagtggttttgggctaaactatcatcacaagagtgca 108  Q
    ||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13928901 atcttgatatttctaatgctggaatttcagataatgttcccgagtggttttgggctaaactatcatcacaagagtgca 13928824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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