View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8789_high_6 (Length: 235)

Name: NF8789_high_6
Description: NF8789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8789_high_6
NF8789_high_6
[»] chr7 (19 HSPs)
chr7 (1-227)||(11738145-11738374)
chr7 (1-102)||(11744779-11744880)
chr7 (129-218)||(15680836-15680925)
chr7 (131-218)||(20549820-20549907)
chr7 (129-218)||(32287406-32287495)
chr7 (129-223)||(33994239-33994333)
chr7 (129-218)||(21880179-21880268)
chr7 (156-225)||(5409767-5409836)
chr7 (149-218)||(26033393-26033462)
chr7 (139-218)||(598245-598324)
chr7 (127-218)||(22484050-22484141)
chr7 (156-218)||(2334314-2334376)
chr7 (129-175)||(5835274-5835320)
chr7 (149-206)||(6028683-6028740)
chr7 (129-198)||(8234173-8234242)
chr7 (149-218)||(24339700-24339769)
chr7 (158-218)||(17852056-17852116)
chr7 (129-161)||(22602710-22602742)
chr7 (187-223)||(24289869-24289905)
[»] chr8 (19 HSPs)
chr8 (129-223)||(40332218-40332312)
chr8 (129-218)||(3025578-3025667)
chr8 (129-223)||(18407746-18407840)
chr8 (129-209)||(4298841-4298918)
chr8 (129-218)||(14134726-14134815)
chr8 (134-218)||(926731-926815)
chr8 (129-177)||(4786322-4786370)
chr8 (137-213)||(5813627-5813703)
chr8 (139-213)||(126295-126369)
chr8 (150-224)||(29510230-29510304)
chr8 (132-218)||(36450697-36450783)
chr8 (149-218)||(21465470-21465539)
chr8 (156-213)||(22197679-22197736)
chr8 (149-218)||(22652034-22652103)
chr8 (132-213)||(31109466-31109547)
chr8 (129-161)||(8847283-8847315)
chr8 (129-161)||(11927086-11927118)
chr8 (130-210)||(15023208-15023288)
chr8 (129-161)||(26902175-26902207)
[»] chr1 (32 HSPs)
chr1 (132-218)||(37598861-37598947)
chr1 (129-218)||(1815284-1815373)
chr1 (129-218)||(18337356-18337445)
chr1 (129-218)||(22515830-22515919)
chr1 (129-213)||(5898214-5898298)
chr1 (130-218)||(46348326-46348414)
chr1 (129-224)||(51410052-51410147)
chr1 (129-198)||(7353455-7353525)
chr1 (129-207)||(40181898-40181976)
chr1 (132-218)||(42359392-42359478)
chr1 (129-218)||(1486647-1486741)
chr1 (129-206)||(38078616-38078693)
chr1 (129-210)||(40258884-40258965)
chr1 (179-222)||(21038163-21038206)
chr1 (129-199)||(28674827-28674897)
chr1 (129-163)||(30749867-30749901)
chr1 (129-163)||(30771318-30771352)
chr1 (149-223)||(40917807-40917881)
chr1 (149-218)||(6427522-6427591)
chr1 (149-218)||(31694642-31694711)
chr1 (130-163)||(52903277-52903310)
chr1 (186-218)||(2218312-2218344)
chr1 (130-218)||(5927283-5927371)
chr1 (129-161)||(5944310-5944342)
chr1 (186-218)||(16812640-16812672)
chr1 (179-223)||(21365990-21366034)
chr1 (127-163)||(24334703-24334739)
chr1 (129-213)||(26830615-26830698)
chr1 (150-218)||(32461396-32461464)
chr1 (129-161)||(34371740-34371772)
chr1 (130-198)||(39130730-39130798)
chr1 (129-161)||(44482257-44482289)
[»] chr3 (18 HSPs)
chr3 (129-218)||(55401102-55401191)
chr3 (129-223)||(40993273-40993367)
chr3 (129-218)||(18426976-18427065)
chr3 (129-206)||(10954979-10955056)
chr3 (129-218)||(35222965-35223054)
chr3 (129-218)||(20503492-20503581)
chr3 (129-210)||(28918028-28918111)
chr3 (136-218)||(13845468-13845550)
chr3 (149-223)||(41961577-41961651)
chr3 (129-218)||(8842356-8842445)
chr3 (129-213)||(3631711-3631795)
chr3 (148-212)||(4987229-4987293)
chr3 (130-208)||(7171529-7171607)
chr3 (129-163)||(7928477-7928511)
chr3 (129-198)||(34307738-34307812)
chr3 (130-163)||(8383285-8383318)
chr3 (132-213)||(25093532-25093613)
chr3 (186-218)||(11610593-11610625)
[»] scaffold0053 (1 HSPs)
scaffold0053 (137-218)||(8833-8914)
[»] chr6 (20 HSPs)
chr6 (129-218)||(17841532-17841621)
chr6 (129-223)||(28715322-28715416)
chr6 (129-218)||(28152125-28152214)
chr6 (129-218)||(34595161-34595250)
chr6 (149-223)||(10339052-10339126)
chr6 (128-198)||(29020938-29021008)
chr6 (149-224)||(8365445-8365520)
chr6 (129-223)||(4877970-4878063)
chr6 (129-219)||(32978841-32978931)
chr6 (129-218)||(7378006-7378095)
chr6 (129-163)||(7265591-7265625)
chr6 (129-218)||(6898224-6898313)
chr6 (167-224)||(8776905-8776962)
chr6 (151-212)||(17435259-17435320)
chr6 (129-198)||(19040379-19040448)
chr6 (130-163)||(21924933-21924966)
chr6 (186-218)||(426481-426513)
chr6 (129-161)||(7027269-7027301)
chr6 (129-161)||(9025494-9025526)
chr6 (134-210)||(23771610-23771686)
[»] chr5 (13 HSPs)
chr5 (129-218)||(21576688-21576777)
chr5 (129-218)||(21190999-21191088)
chr5 (129-223)||(43564908-43565002)
chr5 (131-198)||(30502351-30502418)
chr5 (131-198)||(30542694-30542761)
chr5 (128-213)||(30098986-30099071)
chr5 (150-219)||(39268540-39268609)
chr5 (149-218)||(39698599-39698668)
chr5 (129-163)||(28588672-28588706)
chr5 (156-218)||(31084382-31084444)
chr5 (149-218)||(32766875-32766944)
chr5 (129-210)||(42893387-42893468)
chr5 (129-213)||(42029779-42029863)
[»] chr4 (21 HSPs)
chr4 (129-218)||(23292929-23293018)
chr4 (128-223)||(16073420-16073515)
chr4 (137-218)||(34306747-34306828)
chr4 (129-210)||(49431053-49431134)
chr4 (129-209)||(21945530-21945610)
chr4 (129-218)||(2361918-2362007)
chr4 (149-218)||(19312393-19312462)
chr4 (129-210)||(28964199-28964280)
chr4 (129-213)||(8423666-8423750)
chr4 (167-218)||(14465008-14465059)
chr4 (129-175)||(54580009-54580055)
chr4 (166-219)||(28084588-28084641)
chr4 (129-198)||(40179599-40179668)
chr4 (186-225)||(18513171-18513210)
chr4 (182-224)||(3064865-3064907)
chr4 (186-223)||(11596295-11596332)
chr4 (129-218)||(12895217-12895306)
chr4 (129-218)||(35157928-35158017)
chr4 (186-218)||(2054127-2054159)
chr4 (129-209)||(4157463-4157543)
chr4 (132-212)||(20950376-20950456)
[»] chr2 (28 HSPs)
chr2 (129-218)||(2438662-2438751)
chr2 (129-218)||(28596496-28596585)
chr2 (149-218)||(35056926-35056995)
chr2 (129-218)||(37559004-37559093)
chr2 (151-218)||(26769571-26769638)
chr2 (151-209)||(27084318-27084376)
chr2 (129-218)||(18840956-18841045)
chr2 (149-218)||(30717462-30717531)
chr2 (129-208)||(12224250-12224329)
chr2 (149-224)||(37419801-37419876)
chr2 (179-218)||(44635570-44635609)
chr2 (129-163)||(5367219-5367253)
chr2 (132-218)||(15972903-15972989)
chr2 (129-163)||(20242725-20242759)
chr2 (129-207)||(37411198-37411276)
chr2 (129-214)||(5040761-5040846)
chr2 (129-198)||(29176456-29176525)
chr2 (130-163)||(34691803-34691836)
chr2 (130-163)||(34714215-34714248)
chr2 (129-218)||(34993925-34994014)
chr2 (129-218)||(38117102-38117191)
chr2 (128-161)||(44860346-44860379)
chr2 (186-218)||(11223796-11223828)
chr2 (129-161)||(12668423-12668455)
chr2 (129-161)||(18622633-18622665)
chr2 (186-218)||(34691772-34691804)
chr2 (186-218)||(34714184-34714216)
chr2 (129-161)||(36756344-36756376)
[»] scaffold0652 (1 HSPs)
scaffold0652 (132-218)||(405-491)
[»] scaffold0475 (1 HSPs)
scaffold0475 (132-218)||(3338-3424)
[»] scaffold0050 (1 HSPs)
scaffold0050 (129-218)||(70305-70394)
[»] scaffold0512 (1 HSPs)
scaffold0512 (139-218)||(4979-5058)
[»] scaffold0008 (1 HSPs)
scaffold0008 (149-218)||(263304-263373)
[»] scaffold0361 (1 HSPs)
scaffold0361 (129-218)||(14557-14643)
[»] scaffold0083 (1 HSPs)
scaffold0083 (129-175)||(45516-45562)
[»] scaffold0003 (1 HSPs)
scaffold0003 (149-218)||(241652-241721)
[»] scaffold0171 (1 HSPs)
scaffold0171 (129-161)||(23447-23479)
[»] scaffold0086 (1 HSPs)
scaffold0086 (149-213)||(2986-3050)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 7e-76; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 11738374 - 11738145
Alignment:
Q  1 tgctttatttccacaataaacatggtatccatcttcatgatacccacaacatattccagatgggtccacaaatcctacaattcaattcaacaattcataa 100  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||     
T  11738374 tgctttattcccacaataaacatggtatccattttcatgatacccacaacatattccagaaggatcaacaaatcctacaattcaattcaacaattcatag 11738275  T
Q  101 ttaaggggttaataa---nnnnnnnngtgtgcataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaat 197  Q
    |||||||||||||||            | ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  11738274 ttaaggggttaataatatatttttttttttgcataattcagtgtaattatacgtgtcgctgtcggaaatgagacgtgttccacactgagacacgcctaat 11738175  T
Q  198 ctgaggagtgtccgtgtttcacaggttctg 227  Q
    | ||||||||||||||||||| ||||||||    
T  11738174 cagaggagtgtccgtgtttcataggttctg 11738145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 11744880 - 11744779
Alignment:
Q  1 tgctttatttccacaataaacatggtatccatcttcatgatacccacaacatattccagatgggtccacaaatcctacaattcaattcaacaattcataa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||    
T  11744880 tgctttatttccacaataaacatggtatccatcttcatgatacccacaacatattccagaagggttaacaaatcctacaattcaattcaacaattcataa 11744781  T
Q  101 tt 102  Q
    ||    
T  11744780 tt 11744779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 15680836 - 15680925
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||| |||||||||||| |||||||||||||| | ||||||||| | |||| |||||||| |||||  |||||||||||||| ||||    
T  15680836 cataatttagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgtctaattcgaggagtgtccgtgcttca 15680925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 20549820 - 20549907
Alignment:
Q  131 taattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||||||||| |||||||||||||| |  |||| ||| | ||| |||||||||||||||| |||||||| ||||| ||||    
T  20549820 taattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacaatgagacacgcctaatccgaggagtgcccgtgcttca 20549907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 32287495 - 32287406
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||| || |||| |||||||||||||| |||||| |||| | |||| | ||||| ||||||| |||||||||||||| ||||    
T  32287495 cataattcagtgcaagtatatgtgtcggtgtcggacatgacaagtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttca 32287406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 33994239 - 33994333
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 223  Q
    |||||||||||| ||||| | ||||||||||| || | ||||| ||| | |||| |||||||||||||||  |||||||| ||||||||| ||||    
T  33994239 cataattcagtgcaattacaagtgtcggtgtcagacacgacacatgtccaacaccgagacacgcctaatccaaggagtgttcgtgtttcataggt 33994333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 21880179 - 21880268
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||||||||| | |||||||||||||| | ||||| ||| | ||||   ||||||||||||| ||| |||||||||| ||||    
T  21880179 cataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttca 21880268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 5409836 - 5409767
Alignment:
Q  156 gtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggttc 225  Q
    |||||||| | ||||||||| | |||| | ||||||||||||| |||||||||||||| |||| ||||||    
T  5409836 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcataggttc 5409767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 26033462 - 26033393
Alignment:
Q  149 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||| || ||||||||||| | | || | ||||| ||||||| |||||||||||||||||||    
T  26033462 cgtgtcggtgtcagacatgacacgtgtccgataccgcgacacacctaatccgaggagtgtccgtgtttca 26033393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 598245 - 598324
Alignment:
Q  139 tgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||| || ||||||||||| || | ||||||||| | |||| | ||||||||||||| ||| |||||||||| ||||    
T  598245 tgtaattgtaagtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 598324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 218
Target Start/End: Original strand, 22484050 - 22484141
Alignment:
Q  127 tgcataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||||||| |||||||| ||||||||||| || ||||||| ||| | |||  |||||| | || ||| ||| |||||||||| ||||    
T  22484050 tgcataattcagtataattatatgtgtcggtgtcagacatgacacatgtccgacatcgagacatgtctgatccgagaagtgtccgtgcttca 22484141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 2334314 - 2334376
Alignment:
Q  156 gtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||| | ||||| ||| | ||||||| ||||| |||||| |||||||||||||||||||    
T  2334314 gtgtcggacacgacacatgtccgacactgaaacacgtctaatccgaggagtgtccgtgtttca 2334376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 5835274 - 5835320
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgt 175  Q
    |||||||||||||||||||| ||||||||||| || |||||| ||||    
T  5835274 cataattcagtgtaattatatgtgtcggtgtcagacatgacatgtgt 5835320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 6028683 - 6028740
Alignment:
Q  149 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagt 206  Q
    |||||| |||||| | | |||||| |||| ||||||||||||||||||||||| ||||    
T  6028683 cgtgtcagtgtcgaacacgacacgagttcgacactgagacacgcctaatctgaagagt 6028740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 8234173 - 8234242
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 198  Q
    |||||||||||||| ||| | ||| |||||||||| | ||||| ||| | |||| |||||||||||||||    
T  8234173 cataattcagtgtagttacaagtgccggtgtcggacacgacacatgtccgacaccgagacacgcctaatc 8234242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 24339700 - 24339769
Alignment:
Q  149 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||||||||| | ||||||| | | |||| | ||||||||||||| |||||||| ||||| ||||    
T  24339700 cgtgtcggtgtcggacacgacacgtatccgacaccgggacacgcctaatccgaggagtgcccgtgcttca 24339769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 17852056 - 17852116
Alignment:
Q  158 gtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||| ||||||||||| | |||| ||||||| ||||||  |||||||||||||| ||||    
T  17852056 gtcggacatgacacgtgtccgacaccgagacacacctaattcgaggagtgtccgtgcttca 17852116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 22602742 - 22602710
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcg 161  Q
    |||||||||||||||||||| ||||||||||||    
T  22602742 cataattcagtgtaattatatgtgtcggtgtcg 22602710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 24289869 - 24289905
Alignment:
Q  187 acacgcctaatctgaggagtgtccgtgtttcacaggt 223  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  24289869 acactcctaatctgaggagtgtccgtgtttcataggt 24289905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 40332218 - 40332312
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 223  Q
    |||||||||||||||||| | |||||||||| ||| | ||||||||| |||||| | ||| ||||||||| ||||||||||||||||||||||||    
T  40332218 cataattcagtgtaattacaagtgtcggtgtgggacacgacacgtgtcccacaccgggacgcgcctaatccgaggagtgtccgtgtttcacaggt 40332312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 3025578 - 3025667
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||||||||||| ||||| |||||||| | |||||||||   |||||| |||||| |||||| |||||||||||||| ||||    
T  3025578 cataattcagtgtaattataggtgtcagtgtcggacacgacacgtgtctgacactgtgacacggctaatccgaggagtgtccgtgcttca 3025667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 18407746 - 18407840
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 223  Q
    |||||||||||||||||| | |||||| || |||| | ||||| ||| | |||||  ||||||||||||  |||||||||||||| |||| ||||    
T  18407746 cataattcagtgtaattacaagtgtcgctgccggacacgacacatgtccgacactaggacacgcctaattggaggagtgtccgtgcttcataggt 18407840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 4298918 - 4298841
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtc 209  Q
    ||||||| | |||||||| | ||||||||||| ||  |||||||||||| |||| | ||||||||||||||||||||||||    
T  4298918 cataatttaatgtaattacaagtgtcggtgtcaga--tgacacgtgttcgacacgg-gacacgcctaatctgaggagtgtc 4298841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 14134726 - 14134815
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||||||||||||||  ||||||||||  | | ||||||||| |  |||   ||||||||||||  |||||||||||||||||||    
T  14134726 cataattcagtgtaattatatatgtcggtgtcaaacacgacacgtgtccgtcaccaggacacgcctaattcgaggagtgtccgtgtttca 14134815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 926815 - 926731
Alignment:
Q  134 ttcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||||||||| ||||||||||||||   ||||||||| | |||| | |||| || | ||| |||||||||||||| ||||    
T  926815 ttcagtgtaattataagtgtcggtgtcggacgcgacacgtgtccgacaccgggacatgctttatccgaggagtgtccgtgcttca 926731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 4786370 - 4786322
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttc 177  Q
    |||||||||||||||||||| |||||||||||||| | |||| ||||||    
T  4786370 cataattcagtgtaattatatgtgtcggtgtcggatacgacatgtgttc 4786322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 5813627 - 5813703
Alignment:
Q  137 agtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 213  Q
    ||||||| || | |||||||||||||| | ||||||||| | |||| | ||||||||||||  ||||||||||||||    
T  5813627 agtgtaaatacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaattggaggagtgtccgtg 5813703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 126369 - 126295
Alignment:
Q  139 tgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 213  Q
    |||||||||| ||||| |||||||| | ||||||||| | | || | |||||| |||||| ||||||||||||||    
T  126369 tgtaattatatgtgtcagtgtcggacacgacacgtgtccaataccgggacacggctaatccgaggagtgtccgtg 126295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 29510304 - 29510230
Alignment:
Q  150 gtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggtt 224  Q
    |||||||||||||| | ||| ||||| | |||| | ||||| ||||||| |||||||||||||| |||| |||||    
T  29510304 gtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcataggtt 29510230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 36450783 - 36450697
Alignment:
Q  132 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||||||||| | |||| ||||||||| | ||| ||||| | ||||   ||||||||||||| |||||||||| ||| ||||    
T  36450783 aattcagtgtaattacaagtgtaggtgtcggacacgacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttca 36450697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 21465470 - 21465539
Alignment:
Q  149 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||| |||||||| | ||||||||| | |||| | || ||||||||| ||||||||||||||| ||||    
T  21465470 cgtgtcagtgtcggacacgacacgtgtccaacacagggatacgcctaatttgaggagtgtccgtgcttca 21465539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 22197736 - 22197679
Alignment:
Q  156 gtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 213  Q
    |||||||| ||||||||||| | |||| |   ||||||||||||||||||||||||||    
T  22197736 gtgtcggacatgacacgtgtccgacaccggatcacgcctaatctgaggagtgtccgtg 22197679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 22652034 - 22652103
Alignment:
Q  149 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||||||||| | |||| |||| | |||| | |||||| |||||| |||||||||||||| ||||    
T  22652034 cgtgtcggtgtcggacacgacatgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttca 22652103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 31109547 - 31109466
Alignment:
Q  132 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 213  Q
    |||||||| ||| |||| ||||| |||||||| |||   |||||   |||||| ||||||||||||| ||||||||||||||    
T  31109547 aattcagtctaactatatgtgtcagtgtcggacatgtgtcgtgtatgacactgggacacgcctaatccgaggagtgtccgtg 31109466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 8847283 - 8847315
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcg 161  Q
    |||||||||||||||||||| ||||||||||||    
T  8847283 cataattcagtgtaattatatgtgtcggtgtcg 8847315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 11927118 - 11927086
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcg 161  Q
    |||||||||||||||||||| ||||||||||||    
T  11927118 cataattcagtgtaattatatgtgtcggtgtcg 11927086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 15023288 - 15023208
Alignment:
Q  130 ataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtcc 210  Q
    ||||||||||||||||| | |||||| ||||||| | ||||||||| | |  |||  ||||| |||||| |||||||||||    
T  15023288 ataattcagtgtaattacaagtgtcgatgtcggatacgacacgtgtccgatgctggaacacgtctaatccgaggagtgtcc 15023208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 26902207 - 26902175
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcg 161  Q
    |||||||||||||||||||| ||||||||||||    
T  26902207 cataattcagtgtaattatatgtgtcggtgtcg 26902175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 37598861 - 37598947
Alignment:
Q  132 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||||||||||| |||||||||||||| | ||||||||| | ||| || ||||||||||||| |||||||||||||| ||||    
T  37598861 aattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttca 37598947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 1815284 - 1815373
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||||||||| | ||||||||||| || | ||||| ||| | |||| | |||||||||||||||||||||| ||||| ||||    
T  1815284 cataattcagtgtaattacaagtgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatctgaggagtgaccgtgattca 1815373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 18337356 - 18337445
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||||||||| | |||||||||||||| |  |||||||| | |||||| |||| |||| ||| |||||||||||||| ||||    
T  18337356 cataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgacactgggacatgcctgatccgaggagtgtccgtgcttca 18337445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 22515919 - 22515830
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||| |||||||||| | |||||||||||||| | ||||| | | | |||| ||||||||||||||| |||||||||||||| ||||    
T  22515919 cataatttagtgtaattacaagtgtcggtgtcggacacgacacatatccgacaccgagacacgcctaatccgaggagtgtccgtgcttca 22515830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 5898298 - 5898214
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 213  Q
    |||||||||||||||||||| | ||||||||| || | ||||||||| | |||| | |||||| |||||| ||||||||||||||    
T  5898298 cataattcagtgtaattatatgcgtcggtgtcagacacgacacgtgtccaacaccgggacacgtctaatccgaggagtgtccgtg 5898214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 46348414 - 46348326
Alignment:
Q  130 ataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||| |||||||||| | |||||||||||||| | ||||||||| | |||| ||||||||||| ||| |||| ||||||||| ||||    
T  46348414 ataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctgatccgaggtgtgtccgtgcttca 46348326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 51410052 - 51410147
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggtt 224  Q
    |||||||||||||||||| | |||||||||||||| | ||||||| | | |||| |||||||||||||||  |||||| | |||| |||| |||||    
T  51410052 cataattcagtgtaattacaagtgtcggtgtcggacacgacacgtatccgacaccgagacacgcctaatccaaggagtattcgtgcttcataggtt 51410147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 7353525 - 7353455
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttcc-acactgagacacgcctaatc 198  Q
    ||||||| ||||||||||||  ||||||||||| | ||||||||| |||| ||||||||||||||||||||    
T  7353525 cataatttagtgtaattatatatgtcggtgtcgaacatgacacgttttccgacactgagacacgcctaatc 7353455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 40181898 - 40181976
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtg 207  Q
    |||||||||||||||||||| || ||||||||||| |  |||||||| | |||| | ||||||||||||| ||||||||    
T  40181898 cataattcagtgtaattatatgtatcggtgtcggacacaacacgtgtcctacaccgggacacgcctaatccgaggagtg 40181976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 42359478 - 42359392
Alignment:
Q  132 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||||||||| | |||||||||||||| | |||  |||| | |||| | ||||||||||||| |||||||||||||| ||||    
T  42359478 aattcagtgtaattacaagtgtcggtgtcggacaagacgtgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttca 42359392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 1486741 - 1486647
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcg-----gaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||||||||||| ||||||||||||     || | ||||||||| | |||| | ||||||||||||| |||||||||| ||| ||||    
T  1486741 cataattcagtgtaattataagtgtcggtgtcgtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttca 1486647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 38078693 - 38078616
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagt 206  Q
    ||||||||| |||||||| | |||||||||||||| | ||||| ||||| ||||   ||||||||||||| |||||||    
T  38078693 cataattcaatgtaattacaagtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgaggagt 38078616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 40258965 - 40258884
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtcc 210  Q
    |||||||||||||||||| | ||||||||||| || | ||||| ||| | ||||   ||||||||||||| |||||||||||    
T  40258965 cataattcagtgtaattacaagtgtcggtgtcagacacgacacctgtccgacaccaggacacgcctaatccgaggagtgtcc 40258884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 21038163 - 21038206
Alignment:
Q  179 acactgagacacgcctaatctgaggagtgtccgtgtttcacagg 222  Q
    ||||||||||||||||||||||| ||||||| ||| ||||||||    
T  21038163 acactgagacacgcctaatctgatgagtgtctgtgcttcacagg 21038206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 28674827 - 28674897
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatct 199  Q
    ||||||||||| ||||||||  ||| |||||| || | ||||| ||| | |||||||||||||||||||||    
T  28674827 cataattcagtataattatatatgttggtgtcagacacgacacttgtccaacactgagacacgcctaatct 28674897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 30749867 - 30749901
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcgga 163  Q
    |||||||||||||||||||| ||||||||||||||    
T  30749867 cataattcagtgtaattatatgtgtcggtgtcgga 30749901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 30771318 - 30771352
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcgga 163  Q
    |||||||||||||||||||| ||||||||||||||    
T  30771318 cataattcagtgtaattatatgtgtcggtgtcgga 30771352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 40917807 - 40917881
Alignment:
Q  149 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 223  Q
    ||||||||||| ||| | ||||||||| | |||| | ||||||||||||| ||||| |||||||| |||| ||||    
T  40917807 cgtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcataggt 40917881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 6427522 - 6427591
Alignment:
Q  149 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||| || |||||| | ||||||||| | |||| | |||||||||||||||| ||||||||||| ||||    
T  6427522 cgtgtaggcgtcggacacgacacgtgtccgacaccgggacacgcctaatctgatgagtgtccgtgcttca 6427591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 31694711 - 31694642
Alignment:
Q  149 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||||||||| |  |||| | ||| |||| |  ||||||||||||||||||||||||||| ||||    
T  31694711 cgtgtcggtgtcggacacaacacatattcgacaccggaacacgcctaatctgaggagtgtccgtgcttca 31694642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 52903277 - 52903310
Alignment:
Q  130 ataattcagtgtaattatacgtgtcggtgtcgga 163  Q
    ||||||||||||||||||| ||||||||||||||    
T  52903277 ataattcagtgtaattatatgtgtcggtgtcgga 52903310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 2218312 - 2218344
Alignment:
Q  186 gacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||||||||||||||||||| ||||    
T  2218312 gacacgcctaatctgaggagtgtccgtgcttca 2218344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 5927371 - 5927283
Alignment:
Q  130 ataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||| | |||||||| | ||||| |||||||| ||||||  ||| | |||  || ||| ||||||||||||||||||||||| ||||    
T  5927371 ataatttaatgtaattacaagtgtcagtgtcggacatgacaaatgtccgacatcgaaacatgcctaatctgaggagtgtccgtgcttca 5927283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 5944310 - 5944342
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcg 161  Q
    |||||||||||||||||||| ||||||||||||    
T  5944310 cataattcagtgtaattataagtgtcggtgtcg 5944342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 16812640 - 16812672
Alignment:
Q  186 gacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||||||||||||||||||| ||||    
T  16812640 gacacgcctaatctgaggagtgtccgtgcttca 16812672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 21366034 - 21365990
Alignment:
Q  179 acactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 223  Q
    |||| ||||||||||||||| |||||||||||||| |||| ||||    
T  21366034 acaccgagacacgcctaatccgaggagtgtccgtgcttcataggt 21365990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 24334739 - 24334703
Alignment:
Q  127 tgcataattcagtgtaattatacgtgtcggtgtcgga 163  Q
    |||||||||||||||||||| | ||||||||||||||    
T  24334739 tgcataattcagtgtaattacaagtgtcggtgtcgga 24334703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 26830615 - 26830698
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 213  Q
    ||||||| | |||||||||| |||||| |||| || |  |||||||||| | || | ||||||||||||| ||||||||||||||    
T  26830615 cataattaaatgtaattataagtgtcg-tgtcagacactacacgtgttcgataccgggacacgcctaatcagaggagtgtccgtg 26830698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 32461464 - 32461396
Alignment:
Q  150 gtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||||| | |||||||||   |||||| |||||||||||||  || |||||||||| ||||    
T  32461464 gtgtcggtgtcggacacgacacgtgtctgacactgggacacgcctaatccaagaagtgtccgtgcttca 32461396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 34371740 - 34371772
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcg 161  Q
    |||||||||||||||||||| ||||||||||||    
T  34371740 cataattcagtgtaattatatgtgtcggtgtcg 34371772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 39130798 - 39130730
Alignment:
Q  130 ataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 198  Q
    |||||| |||||||||||| |||||||||||||| |  ||||||| || ||| || ||||||| |||||    
T  39130798 ataatttagtgtaattatatgtgtcggtgtcggacacaacacgtgctcgacattgggacacgcttaatc 39130730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 44482257 - 44482289
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcg 161  Q
    |||||||||||||||||||| ||||||||||||    
T  44482257 cataattcagtgtaattatatgtgtcggtgtcg 44482289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 55401102 - 55401191
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||| |||||||||| | |||||||||||||| | ||||||||| | |||| ||||||||||||||| |||||||||||||| ||||    
T  55401102 cataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttca 55401191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 40993367 - 40993273
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 223  Q
    |||||||||||||||||||| |||||||||||||| | ||||| ||| | |||| | ||||||||||||| ||||||||||| || |||| ||||    
T  40993367 cataattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcataggt 40993273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 18426976 - 18427065
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||| |||||||||||  ||||||||||||| | ||||||||| |  ||| | ||||| |||||||||||||||||||||||||||    
T  18426976 cataattcggtgtaattatatatgtcggtgtcggatacgacacgtgtccggcaccgggacacacctaatctgaggagtgtccgtgtttca 18427065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 10954979 - 10955056
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagt 206  Q
    |||||||||||||||| | | |||||||||||||| | ||||||||| | |||||| ||||||||||||| |||||||    
T  10954979 cataattcagtgtaatcacaagtgtcggtgtcggacacgacacgtgtccgacactgggacacgcctaatccgaggagt 10955056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 35222965 - 35223054
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||||   |||| | ||||||| | ||| |||||||||||||| ||||    
T  35222965 cataattcaatgtaattatatgtgtcggtgtcggacatgacacgtgtctgacacggggacacgctttatccgaggagtgtccgtgcttca 35223054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 20503492 - 20503581
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||||||||| | |||||||||| ||| | ||||| |||   |||| | ||||||||||||| |||||||||||||| ||||    
T  20503492 cataattcagtgtaattacaagtgtcggtgttggacacgacacatgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttca 20503581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 28918028 - 28918111
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtc--ggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtcc 210  Q
    |||||||||||||||||| | |||||||||||  ||| | ||||||||| | |||||| |||||||||||||  ||||||||||    
T  28918028 cataattcagtgtaattacaagtgtcggtgtcgtggacacgacacgtgtccgacactgggacacgcctaatccaaggagtgtcc 28918111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 13845550 - 13845468
Alignment:
Q  136 cagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||||||| |||||||||||||| | || ||||||   |||| ||||||||||| |||  ||||||||||||| ||||    
T  13845550 cagtgtaattatatgtgtcggtgtcggacacgagacgtgtctgacacggagacacgccttatccaaggagtgtccgtgcttca 13845468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 41961651 - 41961577
Alignment:
Q  149 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 223  Q
    ||||||||| ||||| | ||||||||| | |||||| ||||||||||||| ||| |||||||||| |||| ||||    
T  41961651 cgtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcataggt 41961577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 8842356 - 8842445
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||  |||||||||||  |||||||||| || | ||||| ||||  | | |||||||||||||||| |||||||||||||| ||||    
T  8842356 cataatttggtgtaattatatatgtcggtgtcagacacgacacatgttagatattgagacacgcctaatccgaggagtgtccgtgcttca 8842445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 3631711 - 3631795
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 213  Q
    |||||||||||||||||||| ||| | |||||||| | ||||| ||| | ||||   |||||||||| || ||||||||||||||    
T  3631711 cataattcagtgtaattatatgtgccagtgtcggacacgacacatgtccgacaccaggacacgcctagtccgaggagtgtccgtg 3631795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 4987293 - 4987229
Alignment:
Q  148 acgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgt 212  Q
    |||||||||||| ||| | ||||||||| | |||| | ||||||||||||| |||||||||||||    
T  4987293 acgtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgt 4987229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 7171529 - 7171607
Alignment:
Q  130 ataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgt 208  Q
    ||||||| ||||||||| | |||| ||||||||| | ||||||||| | |||| | |||||||||||||  ||||||||    
T  7171529 ataattcggtgtaattacaagtgttggtgtcggacacgacacgtgtccgacaccgcgacacgcctaatccaaggagtgt 7171607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 7928477 - 7928511
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcgga 163  Q
    |||||||||||||||||||| ||||||||||||||    
T  7928477 cataattcagtgtaattatatgtgtcggtgtcgga 7928511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 34307812 - 34307738
Alignment:
Q  129 cataattcagtgtaattata-----cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 198  Q
    |||| |||||||||||||||     ||||||||||||||| | ||||||| ||| | ||||||||||||||||||    
T  34307812 catatttcagtgtaattataagtgtcgtgtcggtgtcggacacgacacgtcttcgatactgagacacgcctaatc 34307738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 8383285 - 8383318
Alignment:
Q  130 ataattcagtgtaattatacgtgtcggtgtcgga 163  Q
    ||||||||||||||||||| ||||||||||||||    
T  8383285 ataattcagtgtaattataagtgtcggtgtcgga 8383318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 25093532 - 25093613
Alignment:
Q  132 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 213  Q
    ||||||||||||||||| |||||||||||||| |  |||| ||| | |||||||  |||  ||||||||| |||||| ||||    
T  25093532 aattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacactgaagcacttctaatctgaagagtgttcgtg 25093613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 11610593 - 11610625
Alignment:
Q  186 gacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||||||||||||||||||| ||||    
T  11610593 gacacgcctaatctgaggagtgtccgtgcttca 11610625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 8833 - 8914
Alignment:
Q  137 agtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||| | |||||||||||||| | ||||||||| | |||| ||||||||||||||||||||||| |||||| ||||    
T  8833 agtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggagtctccgtgcttca 8914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 17841621 - 17841532
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||| |||||||||| | ||| |||||||||| | |||| |||| | |||||||||||||||||||| |||||||||||||| ||||    
T  17841621 cataatttagtgtaattacaagtgacggtgtcggacacgacatgtgtccgacactgagacacgcctaatccgaggagtgtccgtgcttca 17841532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 28715322 - 28715416
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 223  Q
    |||||||||||||||||| | |||||||||||||| | ||||||||||| |||| | ||||||||||||  ||| ||||| |||| |||| ||||    
T  28715322 cataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgttcgacaccgggacacgcctaattcgagaagtgtacgtgcttcataggt 28715416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 28152125 - 28152214
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||||||||| | |||||||||||||| | ||||||||| | |||| | |||| |||||||| ||||||||| |||| ||||    
T  28152125 cataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttca 28152214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 34595161 - 34595250
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||||||||| | |||||||||||||| | |||||||||   |||| | ||||| ||||||| |||||||||||||| ||||    
T  34595161 cataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttca 34595250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 10339126 - 10339052
Alignment:
Q  149 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 223  Q
    ||||||||||||||| | ||||| ||| | |||||| ||||||||||||| |||||||||||||| |||| ||||    
T  10339126 cgtgtcggtgtcggacacgacacatgtccgacactgggacacgcctaatcggaggagtgtccgtgcttcataggt 10339052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 29020938 - 29021008
Alignment:
Q  128 gcataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 198  Q
    ||||||||||||||||||||| ||||  |||||||| | ||||||||||| |||| ||| |||||||||||    
T  29020938 gcataattcagtgtaattataggtgtttgtgtcggacacgacacgtgttcgacaccgaggcacgcctaatc 29021008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 8365520 - 8365445
Alignment:
Q  149 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggtt 224  Q
    ||||||||| ||||| | ||||||||| | |||||| ||||||||||||| ||||||| |||||| |||| |||||    
T  8365520 cgtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtctccgtgcttcataggtt 8365445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 4877970 - 4878063
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 223  Q
    ||||||| ||| |||||| | |||||||||||||| | ||||| ||| | |||| | ||||||||||||| |||||||||||||| |||| ||||    
T  4877970 cataattaagtataattacaagtgtcggtgtcggacacgacacatgtccgacacag-gacacgcctaatccgaggagtgtccgtgcttcataggt 4878063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 32978931 - 32978841
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcac 219  Q
    ||||||| |||||||||| | |||||||||||||| | ||||| ||| | |||| | |||||| ||||||  ||||||||||||| |||||    
T  32978931 cataattaagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgtctaatccaaggagtgtccgtgcttcac 32978841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 7378006 - 7378095
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||| |||||||||| |||||||||||||| | |||| |  | | |||| | |||||| |||||||||| |||||||||| ||||    
T  7378006 cataattcaatgtaattatatgtgtcggtgtcggacacgacatgcatccgacaccgggacacggctaatctgagaagtgtccgtgcttca 7378095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 7265625 - 7265591
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcgga 163  Q
    |||||||||||||||||||| ||||||||||||||    
T  7265625 cataattcagtgtaattatatgtgtcggtgtcgga 7265591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 6898313 - 6898224
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||| |||||||||| | |||||||||||||| | ||  ||||| | |||| || |||||||||||| || |||||| |||| ||||    
T  6898313 cataattaagtgtaattacaagtgtcggtgtcggacacgaagcgtgtccaacaccgaaacacgcctaatccgatgagtgttcgtgcttca 6898224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 8776962 - 8776905
Alignment:
Q  167 gacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggtt 224  Q
    ||||||||| | |||| ||||||| ||||||| |||||||||||||| |||| |||||    
T  8776962 gacacgtgtccgacaccgagacacacctaatccgaggagtgtccgtgcttcataggtt 8776905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 17435259 - 17435320
Alignment:
Q  151 tgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgt 212  Q
    ||||| ||||||| | ||||||||||| |||||| |||||| |||||||||  |||||||||    
T  17435259 tgtcgatgtcggacacgacacgtgttcgacactgggacacgtctaatctgaaaagtgtccgt 17435320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 19040379 - 19040448
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 198  Q
    |||||||||||||||||||| ||||| |||||||| | ||||| ||||| ||  || ||||| |||||||    
T  19040379 cataattcagtgtaattatatgtgtctgtgtcggacacgacacatgttcaactttgggacacacctaatc 19040448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 21924966 - 21924933
Alignment:
Q  130 ataattcagtgtaattatacgtgtcggtgtcgga 163  Q
    ||||||||||||||||||| ||||||||||||||    
T  21924966 ataattcagtgtaattatatgtgtcggtgtcgga 21924933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 426513 - 426481
Alignment:
Q  186 gacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||||||||||||||||||| ||||    
T  426513 gacacgcctaatctgaggagtgtccgtgcttca 426481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 7027269 - 7027301
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcg 161  Q
    |||||||||||||||||||| ||||||||||||    
T  7027269 cataattcagtgtaattatatgtgtcggtgtcg 7027301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 9025526 - 9025494
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcg 161  Q
    |||||||||||||||||||| ||||||||||||    
T  9025526 cataattcagtgtaattatatgtgtcggtgtcg 9025494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 23771610 - 23771686
Alignment:
Q  134 ttcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtcc 210  Q
    ||||||||||||| |  ||||||||||||| | |||| |||| | |||| |||||||| |||| |||| ||||||||    
T  23771610 ttcagtgtaattacaaatgtcggtgtcggacacgacatgtgtccgacacagagacacgtctaacctgaagagtgtcc 23771686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 21576777 - 21576688
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||||||||| | |||||| ||||||| | |||||||||   |||||| ||||||||||||| |||||||||||||| ||||    
T  21576777 cataattcagtgtaattacaagtgtcgatgtcggacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttca 21576688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 21191088 - 21190999
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||||||||| | |||||||||||||| |  |||||||| | || | | ||||||||||||| |||||||||||||| ||||    
T  21191088 cataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgactccgggacacgcctaatccgaggagtgtccgtgcttca 21190999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 43564908 - 43565002
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 223  Q
    ||||||| |||||||||||| |||||||||||||| | |||| |||| | || | | ||||||||||||| ||| |||||||||| |||| ||||    
T  43564908 cataatttagtgtaattataagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcataggt 43565002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 30502418 - 30502351
Alignment:
Q  131 taattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 198  Q
    |||||||||||||||||| |||||||||||||| | ||||| ||| | |||||| |||| ||||||||    
T  30502418 taattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatc 30502351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 30542761 - 30542694
Alignment:
Q  131 taattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 198  Q
    |||||||||||||||||| |||||||||||||| | ||||| ||| | |||||| |||| ||||||||    
T  30542761 taattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatc 30542694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 30099071 - 30098986
Alignment:
Q  128 gcataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 213  Q
    ||||||||| ||||||||||| |||||||||||||| | |||||||||   |||| | ||||||||| |||  |||||||| ||||    
T  30099071 gcataattctgtgtaattatatgtgtcggtgtcggatacgacacgtgtctgacacggggacacgccttatccaaggagtgttcgtg 30098986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 39268609 - 39268540
Alignment:
Q  150 gtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcac 219  Q
    |||||||||| ||| | |||| |||| | |||||| ||||||||||||| |||||||||||||| |||||    
T  39268609 gtgtcggtgttggacacgacatgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcac 39268540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 39698599 - 39698668
Alignment:
Q  149 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||||||||| | |||| || | | |||| ||||||||||||||| |||||||||||||| ||||    
T  39698599 cgtgtcggtgtcggacacgacatgtatccgacaccgagacacgcctaatccgaggagtgtccgtgcttca 39698668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 28588706 - 28588672
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcgga 163  Q
    |||||||||||||||||||| ||||||||||||||    
T  28588706 cataattcagtgtaattataggtgtcggtgtcgga 28588672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 31084382 - 31084444
Alignment:
Q  156 gtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||| | ||||||||| | |||||| |||| |||||||| |||||||||||||| ||||    
T  31084382 gtgtcggacacgacacgtgtccgacactgggacatgcctaatccgaggagtgtccgtggttca 31084444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 32766944 - 32766875
Alignment:
Q  149 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||||||| ||| ||||||||| | ||||   || ||| ||||||||||||||||||||| ||||    
T  32766944 cgtgtcggtgtcgaaaacgacacgtgtccgacaccaggatacgtctaatctgaggagtgtccgtgcttca 32766875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 42893387 - 42893468
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtcc 210  Q
    |||||| ||||||||||| | ||||||||||| || |  |||||||| | ||||   |||||||||||| ||||||||||||    
T  42893387 cataatccagtgtaattacaagtgtcggtgtcagacacaacacgtgtccgacaccaggacacgcctaatatgaggagtgtcc 42893468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 42029779 - 42029863
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 213  Q
    ||||||||| |||||||||| || ||||||||||| | ||||| |||    |||  |||||||||| ||| ||||||||||||||    
T  42029779 cataattcaatgtaattatatgtatcggtgtcggacacgacacatgtctgtcacgtagacacgccttatccgaggagtgtccgtg 42029863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 23293018 - 23292929
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||||| |||||| | |||||||||||||| | ||||||||| | |||| | ||||||||||||| |||||||||||||| ||||    
T  23293018 cataattcagtataattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttca 23292929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 16073420 - 16073515
Alignment:
Q  128 gcataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 223  Q
    ||||||||||||||||||| | |||||||||||||| | || || ||| | ||||| |||||||||||||| ||||||||||| || |||| ||||    
T  16073420 gcataattcagtgtaattacaagtgtcggtgtcggacacgatacatgtccgacactaagacacgcctaatccgaggagtgtccatgcttcataggt 16073515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 34306828 - 34306747
Alignment:
Q  137 agtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||| | |||||||||||||| | ||||||||| | |||| ||||||||||||||||||||| ||| |||| ||||    
T  34306828 agtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggaatgttcgtgcttca 34306747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 49431053 - 49431134
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtcc 210  Q
    |||||||||||||||||| | |||||||||||||| | ||||||||| | |||| | ||||||||| ||| |||||||||||    
T  49431053 cataattcagtgtaattaaaagtgtcggtgtcggacacgacacgtgtccaacaccgggacacgccttatccgaggagtgtcc 49431134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 21945530 - 21945610
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtc 209  Q
    |||||||||||||||||| | |||||||||||||| ||||||| ||| | |||| |  |||||||||||| ||||||||||    
T  21945530 cataattcagtgtaattacaagtgtcggtgtcggacatgacacatgtccgacaccgcaacacgcctaatccgaggagtgtc 21945610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 2362007 - 2361918
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||| |||||||||| | |||||||||||||| | ||| |||||   |||| ||||||| |||||||||| ||||||||||| ||||    
T  2362007 cataatttagtgtaattaaaagtgtcggtgtcggacacgactcgtgtctgacaccgagacacacctaatctgacgagtgtccgtgcttca 2361918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 19312393 - 19312462
Alignment:
Q  149 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||| ||||||| | ||||||||| | |||| |||||||| |||||||||| |||||||||||||||    
T  19312393 cgtgtcgttgtcggatacgacacgtgtccgacaccgagacacgtctaatctgagaagtgtccgtgtttca 19312462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 28964280 - 28964199
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtcc 210  Q
    |||||||||||||||||| | ||||| |||||||| | ||||| | | | |||||| ||||||||||||| |||||||||||    
T  28964280 cataattcagtgtaattacaagtgtctgtgtcggacacgacacatatccgacactgggacacgcctaatccgaggagtgtcc 28964199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 8423750 - 8423666
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 213  Q
    ||||||||||||||||||||  ||||||||||||| | ||||  ||| | |||| | ||||||||||||| ||| ||||||||||    
T  8423750 cataattcagtgtaattataaatgtcggtgtcggacacgacagctgtccgacaccgggacacgcctaatcggagaagtgtccgtg 8423666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 14465059 - 14465008
Alignment:
Q  167 gacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||||| |||||| |||||| ||||||||||||||||||||| ||||    
T  14465059 gacacgtgttcgacactgggacacgtctaatctgaggagtgtccgtgcttca 14465008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 54580055 - 54580009
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgt 175  Q
    |||||||||||||||||||| |||||||||||||| | |||||||||    
T  54580055 cataattcagtgtaattataagtgtcggtgtcggacacgacacgtgt 54580009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 28084588 - 28084641
Alignment:
Q  166 tgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcac 219  Q
    |||||||||| | |||||| ||||||||||||| |||||||||||||| |||||    
T  28084588 tgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcac 28084641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 40179668 - 40179599
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 198  Q
    |||||||||||||||||||| | |||||||||||| | ||||| ||||| ||||   |||||||||||||    
T  40179668 cataattcagtgtaattatatgcgtcggtgtcggacacgacacatgttcgacaccatgacacgcctaatc 40179599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 18513210 - 18513171
Alignment:
Q  186 gacacgcctaatctgaggagtgtccgtgtttcacaggttc 225  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  18513210 gacacgcctaatctgaggagtgtccgtgcttcataggttc 18513171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 3064907 - 3064865
Alignment:
Q  182 ctgagacacgcctaatctgaggagtgtccgtgtttcacaggtt 224  Q
    ||||||||||||||||| |||||||||||||| |||| |||||    
T  3064907 ctgagacacgcctaatccgaggagtgtccgtgcttcataggtt 3064865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 11596332 - 11596295
Alignment:
Q  186 gacacgcctaatctgaggagtgtccgtgtttcacaggt 223  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  11596332 gacacgcctaatctgaggagtgtccgtgcttcataggt 11596295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 12895306 - 12895217
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||  ||||||||||| |||||||||||||| | |||| || | | |||  | ||||||||||||| ||||||||| |||| ||||    
T  12895306 cataattttgtgtaattataagtgtcggtgtcggacacgacatgtatccgacatcgggacacgcctaatccgaggagtgttcgtgcttca 12895217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 35158017 - 35157928
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||| |||||||||||| ||||||||||| || | ||||| ||| | |||| |  |||||| ||||| ||| |||||||||| ||||    
T  35158017 cataatttagtgtaattataagtgtcggtgtctgacacgacacatgtccaacaccggaacacgcttaatccgagaagtgtccgtgcttca 35157928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 2054127 - 2054159
Alignment:
Q  186 gacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||||||| ||||||||||||||||    
T  2054127 gacacgcctaatctgaagagtgtccgtgtttca 2054159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 4157463 - 4157543
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtc 209  Q
    ||||||| |||| ||||| | |||||||||||||| | ||||| ||| | |||| |||| |||||||||  ||||||||||    
T  4157463 cataatttagtgcaattacaagtgtcggtgtcggacacgacacatgtccgacaccgagaaacgcctaattcgaggagtgtc 4157543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 20950456 - 20950376
Alignment:
Q  132 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgt 212  Q
    ||||||||||||||||| ||||||||||| || | || || ||||| |||| || |||||| |||||  ||||||| ||||    
T  20950456 aattcagtgtaattatatgtgtcggtgtcagacacgatacatgttcaacacagaaacacgcataatccaaggagtgcccgt 20950376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 2438751 - 2438662
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||||||||| | |||||||||||||| | ||||| ||| | |||| | ||||||||||||| |||||||||||||| ||||    
T  2438751 cataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttca 2438662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 28596496 - 28596585
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||| |||||||||||||| |||||||||||||| | ||||||||| | |||||  ||||| ||||||| |||||||||||||| ||||    
T  28596496 cataagtcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacactcggacactcctaatccgaggagtgtccgtgcttca 28596585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 35056926 - 35056995
Alignment:
Q  149 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||||||||| | ||||||||| | |||| || ||||||||||||||||||||||||||| ||||    
T  35056926 cgtgtcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttca 35056995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 37559004 - 37559093
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||| |||||||| | ||||||||||||||  |||||||||| | |||| |  |||||| ||||| |||||||||||||| ||||    
T  37559004 cataattcaatgtaattacaagtgtcggtgtcggacttgacacgtgtccgacaccggtacacgcttaatccgaggagtgtccgtgcttca 37559093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 26769571 - 26769638
Alignment:
Q  151 tgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||| ||||| | ||||||||| | |||||| ||||||||||||| |||||||||||||| ||||    
T  26769571 tgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 26769638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 27084318 - 27084376
Alignment:
Q  151 tgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtc 209  Q
    ||||||||||||| | ||||||||| | |||| ||||||||||||||| ||||||||||    
T  27084318 tgtcggtgtcggacacgacacgtgtccaacaccgagacacgcctaatcggaggagtgtc 27084376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 18841045 - 18840956
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||| |||||||||| | ||||||||||| || | ||||| ||| | |||| | ||||| ||||||| |||||||||||||| ||||    
T  18841045 cataattaagtgtaattacaagtgtcggtgtcagacacgacacatgtccgacaccgggacacacctaatccgaggagtgtccgtgcttca 18840956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 30717531 - 30717462
Alignment:
Q  149 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||| ||||||| | ||||||||||| |||||| || ||||||||||  ||||||||||||| ||||    
T  30717531 cgtgtcgttgtcggacacgacacgtgttcgacactgggatacgcctaatccaaggagtgtccgtgcttca 30717462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 12224250 - 12224329
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgt 208  Q
    |||||| || |||||||| | |||||||||||||| | || |||||| | |||||| |||||||||||||  ||||||||    
T  12224250 cataatccaatgtaattacaagtgtcggtgtcggacacgatacgtgtccgacactgggacacgcctaatccaaggagtgt 12224329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 37419801 - 37419876
Alignment:
Q  149 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggtt 224  Q
    ||||||||||||||| | ||  ||||| | |||| | ||||||||||||| |||||||||||||| |||| |||||    
T  37419801 cgtgtcggtgtcggacacgatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcataggtt 37419876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 44635570 - 44635609
Alignment:
Q  179 acactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  44635570 acaccgagacacgcctaatctgaggagtgtccgtgcttca 44635609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 5367219 - 5367253
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcgga 163  Q
    |||||||||||||||||||| ||||||||||||||    
T  5367219 cataattcagtgtaattatatgtgtcggtgtcgga 5367253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 15972903 - 15972989
Alignment:
Q  132 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||||||||| | |||||||||||||| | ||||||||| | || | | ||||| ||||||| || || |||||||| ||||    
T  15972903 aattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacgccgggacacacctaatccgaagaatgtccgtgcttca 15972989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 20242759 - 20242725
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcgga 163  Q
    |||||||||||||||||||| ||||||||||||||    
T  20242759 cataattcagtgtaattatatgtgtcggtgtcgga 20242725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 37411276 - 37411198
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtg 207  Q
    ||||||||||||| |||||| |||||| ||||| | | ||| ||||| | |||||| |||||||||| || ||||||||    
T  37411276 cataattcagtgtgattatatgtgtcgatgtcgaacacgacgcgtgtccgacactgggacacgcctagtccgaggagtg 37411198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 5040761 - 5040846
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgt 214  Q
    ||||||||| |||||||| | |||||||||||||| | |||| |||| | || | | |||||||||| ||  ||||||||||||||    
T  5040761 cataattcaatgtaattacaagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctagtccaaggagtgtccgtgt 5040846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 29176525 - 29176456
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 198  Q
    |||||||||||||||||||| |||| ||||| ||| | | ||| ||| | |||||||||||| |||||||    
T  29176525 cataattcagtgtaattataagtgttggtgttggacacggcacatgtccgacactgagacacacctaatc 29176456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 34691836 - 34691803
Alignment:
Q  130 ataattcagtgtaattatacgtgtcggtgtcgga 163  Q
    ||||||||||||||||||| ||||||||||||||    
T  34691836 ataattcagtgtaattatatgtgtcggtgtcgga 34691803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 34714248 - 34714215
Alignment:
Q  130 ataattcagtgtaattatacgtgtcggtgtcgga 163  Q
    ||||||||||||||||||| ||||||||||||||    
T  34714248 ataattcagtgtaattatatgtgtcggtgtcgga 34714215  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 34994014 - 34993925
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||| |||||||||| ||||| |||||| | | |||| |||| | |||||| ||||||||||||   |||||||| |||| ||||    
T  34994014 cataattcaatgtaattatatgtgtcagtgtcgaacacgacatgtgtccgacactgggacacgcctaattcaaggagtgttcgtgcttca 34993925  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 38117191 - 38117102
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||| ||| ||||||||| | |||| ||||||||| |  |||||||| | |||| | ||||||||||||| |||| ||||||||| ||||    
T  38117191 catacttcggtgtaattacaagtgttggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaggggtgtccgtgcttca 38117102  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 44860346 - 44860379
Alignment:
Q  128 gcataattcagtgtaattatacgtgtcggtgtcg 161  Q
    ||||||||||||||||||||| ||||||||||||    
T  44860346 gcataattcagtgtaattatatgtgtcggtgtcg 44860379  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 11223828 - 11223796
Alignment:
Q  186 gacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||||||||||||||||||| ||||    
T  11223828 gacacgcctaatctgaggagtgtccgtgcttca 11223796  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 12668455 - 12668423
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcg 161  Q
    |||||||||||||||||||| ||||||||||||    
T  12668455 cataattcagtgtaattataagtgtcggtgtcg 12668423  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 18622633 - 18622665
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcg 161  Q
    ||||||||||||||||||||||||| |||||||    
T  18622633 cataattcagtgtaattatacgtgttggtgtcg 18622665  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 34691804 - 34691772
Alignment:
Q  186 gacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||||||| |||||||||||||||||||    
T  34691804 gacacgcctaatccgaggagtgtccgtgtttca 34691772  T

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Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 34714216 - 34714184
Alignment:
Q  186 gacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||||||| |||||||||||||||||||    
T  34714216 gacacgcctaatccgaggagtgtccgtgtttca 34714184  T

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Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 36756376 - 36756344
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcg 161  Q
    |||||||||||||||||||| ||||||||||||    
T  36756376 cataattcagtgtaattataagtgtcggtgtcg 36756344  T

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Target: scaffold0652 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 491 - 405
Alignment:
Q  132 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||||||||||||| | |||||||||||||| | ||| ||||| | |||| | ||||| ||||||| |||||||||||||| ||||    
T  491 aattcagtgtaattacaagtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttca 405  T

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Target: scaffold0475 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 3338 - 3424
Alignment:
Q  132 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||| |||||||||| | ||||| |||||||| | |||||||| |  |||||| ||||||||||||| |||||||||||||| ||||    
T  3338 aattaagtgtaattacaagtgtcagtgtcggacaagacacgtggtggacactgggacacgcctaatccgaggagtgtccgtgcttca 3424  T

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Target: scaffold0050 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 70305 - 70394
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||||||||||| |||||||||||||| | ||||||||| | ||||   |||| |||||||| || |||||| |||| ||||    
T  70305 cataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccaggacatgcctaatccgatgagtgttcgtgcttca 70394  T

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Target: scaffold0512 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 5058 - 4979
Alignment:
Q  139 tgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||| | |||||||||||||| | ||||||||| | ||| ||||||| |||||||| |||||||||| ||| ||||    
T  5058 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgacattgagacatgcctaatccgaggagtgtctgtgcttca 4979  T

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Target: scaffold0008 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 263373 - 263304
Alignment:
Q  149 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||| || | ||||||||||| | ||  |||||||||||||| |||||||||||||| ||||    
T  263373 cgtgtcggtgtcagacacgacacgtgttcgataccaagacacgcctaatccgaggagtgtccgtggttca 263304  T

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Target: scaffold0361 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 14557 - 14643
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    |||||||||||||||||| | |||   |||||||| | ||||||||| | |||| |||||||||||||||  |||||||| |||| ||||    
T  14557 cataattcagtgtaattacaagtg---gtgtcggacacgacacgtgtccgacaccgagacacgcctaatcgaaggagtgtacgtgcttca 14643  T

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Target: scaffold0083 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 45562 - 45516
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgt 175  Q
    |||||||||||||||||| | |||||||||||||| | |||||||||    
T  45562 cataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgt 45516  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 241652 - 241721
Alignment:
Q  149 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 218  Q
    ||||| ||||||||| | ||||||||| | |||| | ||||||||||||| ||| |||||||||| ||||    
T  241652 cgtgttggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 241721  T

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Target: scaffold0171 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 23447 - 23479
Alignment:
Q  129 cataattcagtgtaattatacgtgtcggtgtcg 161  Q
    |||||||||||||||||||| ||||||||||||    
T  23447 cataattcagtgtaattataagtgtcggtgtcg 23479  T

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Target: scaffold0086 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 2986 - 3050
Alignment:
Q  149 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 213  Q
    ||||||||| || || | ||||||||||| |||| |  |||||||||||| ||||||||||||||    
T  2986 cgtgtcggtatcagacacgacacgtgttcgacaccggaacacgcctaatccgaggagtgtccgtg 3050  T

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