View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8789_low_1 (Length: 552)

Name: NF8789_low_1
Description: NF8789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8789_low_1
NF8789_low_1
[»] chr7 (8 HSPs)
chr7 (304-542)||(11744847-11745087)
chr7 (21-306)||(11738553-11738841)
chr7 (326-532)||(11738351-11738557)
chr7 (188-227)||(11654071-11654110)
chr7 (188-226)||(17611655-17611693)
chr7 (191-224)||(3266808-3266841)
chr7 (190-226)||(28407712-28407748)
chr7 (191-223)||(32587196-32587228)
[»] chr8 (10 HSPs)
chr8 (188-227)||(21238047-21238086)
chr8 (188-227)||(470937-470976)
chr8 (191-226)||(2024886-2024921)
chr8 (191-226)||(4757580-4757615)
chr8 (191-226)||(10148368-10148403)
chr8 (188-227)||(40618863-40618902)
chr8 (188-226)||(34102528-34102566)
chr8 (190-226)||(2968947-2968983)
chr8 (188-224)||(3673704-3673740)
chr8 (191-223)||(12111002-12111034)
[»] chr2 (8 HSPs)
chr2 (188-224)||(29279358-29279394)
chr2 (191-226)||(28261559-28261594)
chr2 (188-227)||(37994551-37994590)
chr2 (188-226)||(37876399-37876437)
chr2 (188-226)||(41328008-41328046)
chr2 (191-227)||(3309224-3309260)
chr2 (191-227)||(27665967-27666003)
chr2 (191-231)||(28228628-28228668)
[»] chr6 (5 HSPs)
chr6 (188-227)||(31297078-31297117)
chr6 (188-227)||(31851673-31851712)
chr6 (197-227)||(29744494-29744524)
chr6 (188-226)||(33052960-33052998)
chr6 (190-226)||(6419532-6419568)
[»] chr5 (8 HSPs)
chr5 (191-226)||(586172-586207)
chr5 (188-227)||(8984781-8984820)
chr5 (188-227)||(10332340-10332379)
chr5 (188-226)||(13007487-13007525)
chr5 (188-226)||(27576160-27576198)
chr5 (190-226)||(4771114-4771150)
chr5 (201-229)||(11192631-11192659)
chr5 (191-227)||(42396164-42396200)
[»] chr4 (7 HSPs)
chr4 (188-227)||(9048952-9048991)
chr4 (191-226)||(36700502-36700537)
chr4 (188-226)||(32766793-32766831)
chr4 (188-226)||(40065986-40066024)
chr4 (188-226)||(44596938-44596976)
chr4 (188-226)||(56156440-56156478)
chr4 (191-223)||(8747418-8747450)
[»] chr3 (10 HSPs)
chr3 (191-226)||(105710-105745)
chr3 (188-227)||(14859752-14859791)
chr3 (188-226)||(23799740-23799778)
chr3 (196-226)||(40883542-40883572)
chr3 (188-226)||(46304313-46304351)
chr3 (188-226)||(48401524-48401562)
chr3 (188-226)||(50981125-50981163)
chr3 (188-226)||(51084259-51084297)
chr3 (188-224)||(31462414-31462450)
chr3 (190-226)||(54706393-54706429)
[»] chr1 (5 HSPs)
chr1 (191-226)||(42491301-42491336)
chr1 (188-227)||(47133163-47133202)
chr1 (188-226)||(26535598-26535636)
chr1 (188-226)||(27456751-27456789)
chr1 (188-224)||(50377587-50377623)
[»] scaffold0039 (1 HSPs)
scaffold0039 (188-224)||(53193-53229)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 304 - 542
Target Start/End: Complemental strand, 11745087 - 11744847
Alignment:
Q  304 aatagaattagaataggtag--tgtaaatgctaatgagtaatttgacatgattgtgcaataggaagtggtggatcagaaaaggaaccatcaagtattcta 401  Q
    |||||||||| |||||| ||  ||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| ||||||||||    
T  11745087 aatagaattaaaataggcaggatgtaaatgctaatgagtaatttgacatgagtgtgcaataggaagtgatggatctgaaaaggaaccattaagtattcta 11744988  T
Q  402 tttgcaatccattgatttgctgcttcagtgtagtgcactccatcccaactaatgtactttgaaggatcttcacaagaactagcaactatttctttaccat 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11744987 tttgcaatccattgatttgctgcttcagtgtagtgcactccatcccaactaatgtactttgaaggatcttcacaagaactagcaactatttctttaccat 11744888  T
Q  502 taatcgttgctttatttccacaataaacatgatgtccatct 542  Q
    ||||| ||||||||||||||||||||||||| | |||||||    
T  11744887 taatcattgctttatttccacaataaacatggtatccatct 11744847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 306
Target Start/End: Complemental strand, 11738841 - 11738553
Alignment:
Q  21 gttaagatcaatgaaaattttgcaagtgctaattcaagtgcgacaaacatcaattctt-gattccataaaattaaactatggttcatacggttacaaatg 119  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||  || |||||||||||||| ||||||||||||||||||||||||||    
T  11738841 gttaagatcaatgaaagttttgcaagtgctaattcaagtgcaacaaacatcaatgatttgattccataaaattcaactatggttcatacggttacaaatg 11738742  T
Q  120 taattatagtagcggttacataaagtaaaacgatgtctttatcaaaagctattcatgannnnnnnnnnacaaaaactaaacaat----attcattcattc 215  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||          ||||||||||||||||    ||||||||||||    
T  11738741 taattatagtagcggttacataaagtcaaacgatgtctttatcgaaagctattcatga-ttttttttgacaaaaactaaacaatattcattcattcattc 11738643  T
Q  216 aaattgatagaaaacaaagcgaaagaagaaagaaactgtaatctataatgaataaatagaggtaagattaaaccactcttgcattgtaaat 306  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  11738642 aaattgatagaaaacaaagcg-aagaagaaagaaactgtaatctagaatgaataaatagaggtaagattaaaccactcttgcattataaat 11738553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 326 - 532
Target Start/End: Complemental strand, 11738557 - 11738351
Alignment:
Q  326 taaatgctaatgagtaatttgacatgattgtgcaataggaagtggtggatcagaaaaggaaccatcaagtattctatttgcaatccattgatttgctgct 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11738557 taaatgctaatgagtaatttgacatgattgtgcaataggaagtggtggatctgaaaaagaaccatcaagtattctatttgcaatccattgatttgctgct 11738458  T
Q  426 tcagtgtagtgcactccatcccaactaatgtactttgaaggatcttcacaagaactagcaactatttctttaccattaatcgttgctttatttccacaat 525  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||    
T  11738457 tcagtgtagtgcactccatcccaactaatgtactttgaaggatcttcacaagaacttgtaacaatttctttaccattaatcgttgctttattcccacaat 11738358  T
Q  526 aaacatg 532  Q
    |||||||    
T  11738357 aaacatg 11738351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 11654110 - 11654071
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgatagaa 227  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  11654110 acaaaagcaaaacaatattcattcattcaaattgatagaa 11654071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 17611693 - 17611655
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgataga 226  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  17611693 acaaaaacaaaacgatattcattcattcaaattgataga 17611655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 3266841 - 3266808
Alignment:
Q  191 aaaactaaacaatattcattcattcaaattgata 224  Q
    |||| |||||||||||||||||||||||||||||    
T  3266841 aaaaataaacaatattcattcattcaaattgata 3266808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 28407712 - 28407748
Alignment:
Q  190 aaaaactaaacaatattcattcattcaaattgataga 226  Q
    |||||| |||| |||||||||||||||||||||||||    
T  28407712 aaaaacaaaacgatattcattcattcaaattgataga 28407748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 32587196 - 32587228
Alignment:
Q  191 aaaactaaacaatattcattcattcaaattgat 223  Q
    |||| ||||||||||||||||||||||||||||    
T  32587196 aaaaataaacaatattcattcattcaaattgat 32587228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 21238086 - 21238047
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgatagaa 227  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  21238086 acaaaaacaaaacaatattcattcattcaaattgatagaa 21238047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 470937 - 470976
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgatagaa 227  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  470937 acaaaaacaaaacaatattcattcatttaaattgatagaa 470976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 226
Target Start/End: Original strand, 2024886 - 2024921
Alignment:
Q  191 aaaactaaacaatattcattcattcaaattgataga 226  Q
    |||| |||||||||||||||||||||||||||||||    
T  2024886 aaaagtaaacaatattcattcattcaaattgataga 2024921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 226
Target Start/End: Complemental strand, 4757615 - 4757580
Alignment:
Q  191 aaaactaaacaatattcattcattcaaattgataga 226  Q
    |||||||||| |||||||||||||||||||||||||    
T  4757615 aaaactaaacgatattcattcattcaaattgataga 4757580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 226
Target Start/End: Complemental strand, 10148403 - 10148368
Alignment:
Q  191 aaaactaaacaatattcattcattcaaattgataga 226  Q
    |||| |||||||||||||||||||||||||||||||    
T  10148403 aaaaataaacaatattcattcattcaaattgataga 10148368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 40618863 - 40618902
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgatagaa 227  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  40618863 acaaaaacaaaacgatattcattcattcaaattgatagaa 40618902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 34102566 - 34102528
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgataga 226  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  34102566 acaaaaacaaaacaatattcattcattcaagttgataga 34102528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 2968983 - 2968947
Alignment:
Q  190 aaaaactaaacaatattcattcattcaaattgataga 226  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  2968983 aaaaaataaacgatattcattcattcaaattgataga 2968947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 3673740 - 3673704
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgata 224  Q
    |||||||| |||| |||||||||||||||||||||||    
T  3673740 acaaaaacaaaacgatattcattcattcaaattgata 3673704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 12111002 - 12111034
Alignment:
Q  191 aaaactaaacaatattcattcattcaaattgat 223  Q
    |||| ||||||||||||||||||||||||||||    
T  12111002 aaaaataaacaatattcattcattcaaattgat 12111034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 29279358 - 29279394
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgata 224  Q
    ||||||||||||| |||||||||||||||||||||||    
T  29279358 acaaaaactaaacgatattcattcattcaaattgata 29279394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 226
Target Start/End: Original strand, 28261559 - 28261594
Alignment:
Q  191 aaaactaaacaatattcattcattcaaattgataga 226  Q
    |||| |||||||||||||||||||||||||||||||    
T  28261559 aaaaataaacaatattcattcattcaaattgataga 28261594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 37994590 - 37994551
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgatagaa 227  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  37994590 acaaaaacaaaacgatattcattcattcaaattgatagaa 37994551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 37876399 - 37876437
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgataga 226  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  37876399 acaaaaacaaaacgatattcattcattcaaattgataga 37876437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 41328046 - 41328008
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgataga 226  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  41328046 acaaaaacaaaacgatattcattcattcaaattgataga 41328008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 3309260 - 3309224
Alignment:
Q  191 aaaactaaacaatattcattcattcaaattgatagaa 227  Q
    |||| |||| |||||||||||||||||||||||||||    
T  3309260 aaaaataaagaatattcattcattcaaattgatagaa 3309224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 27666003 - 27665967
Alignment:
Q  191 aaaactaaacaatattcattcattcaaattgatagaa 227  Q
    |||| |||||||||||||||||||| |||||||||||    
T  27666003 aaaaataaacaatattcattcattctaattgatagaa 27665967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 28228668 - 28228628
Alignment:
Q  191 aaaactaaacaatattcattcattcaaattgatagaaaaca 231  Q
    |||| |||| |||||||||||||||||||||||||| ||||    
T  28228668 aaaaataaataatattcattcattcaaattgatagagaaca 28228628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 31297117 - 31297078
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgatagaa 227  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  31297117 acaaaaacaaaacgatattcattcattcaaattgatagaa 31297078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 31851673 - 31851712
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgatagaa 227  Q
    |||||||| ||| |||||||||||||||||||||||||||    
T  31851673 acaaaaacaaaataatattcattcattcaaattgatagaa 31851712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 227
Target Start/End: Complemental strand, 29744524 - 29744494
Alignment:
Q  197 aaacaatattcattcattcaaattgatagaa 227  Q
    |||||||||||||||||||||||||||||||    
T  29744524 aaacaatattcattcattcaaattgatagaa 29744494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 33052960 - 33052998
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgataga 226  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  33052960 acaaaaacaaaacgatattcattcattcaaattgataga 33052998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 6419532 - 6419568
Alignment:
Q  190 aaaaactaaacaatattcattcattcaaattgataga 226  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  6419532 aaaaagtaaacgatattcattcattcaaattgataga 6419568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 226
Target Start/End: Complemental strand, 586207 - 586172
Alignment:
Q  191 aaaactaaacaatattcattcattcaaattgataga 226  Q
    |||||||||| |||||||||||||||||||||||||    
T  586207 aaaactaaacgatattcattcattcaaattgataga 586172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 8984781 - 8984820
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgatagaa 227  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  8984781 acaaaaacaaaacgatattcattcattcaaattgatagaa 8984820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 10332340 - 10332379
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgatagaa 227  Q
    |||||||| ||||||||| |||||||||||||||||||||    
T  10332340 acaaaaacaaaacaatatccattcattcaaattgatagaa 10332379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 13007525 - 13007487
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgataga 226  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  13007525 acaaaaacaaaacgatattcattcattcaaattgataga 13007487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 27576160 - 27576198
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgataga 226  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  27576160 acaaaaacaaaacaatattcattcattcaaatcgataga 27576198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 4771150 - 4771114
Alignment:
Q  190 aaaaactaaacaatattcattcattcaaattgataga 226  Q
    |||||| |||| |||||||||||||||||||||||||    
T  4771150 aaaaacaaaacgatattcattcattcaaattgataga 4771114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 11192659 - 11192631
Alignment:
Q  201 aatattcattcattcaaattgatagaaaa 229  Q
    |||||||||||||||||||||||||||||    
T  11192659 aatattcattcattcaaattgatagaaaa 11192631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 42396164 - 42396200
Alignment:
Q  191 aaaactaaacaatattcattcattcaaattgatagaa 227  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  42396164 aaaaataaacgatattcattcattcaaattgatagaa 42396200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 9048991 - 9048952
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgatagaa 227  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  9048991 acaaaaacaaaacgatattcattcattcaaattgatagaa 9048952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 226
Target Start/End: Complemental strand, 36700537 - 36700502
Alignment:
Q  191 aaaactaaacaatattcattcattcaaattgataga 226  Q
    ||||| ||||||||||||||||||||||||||||||    
T  36700537 aaaacgaaacaatattcattcattcaaattgataga 36700502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 32766831 - 32766793
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgataga 226  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  32766831 acaaaaacaaaacaatattcattcattcaaatcgataga 32766793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 40065986 - 40066024
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgataga 226  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  40065986 acaaaaacaaaacaatattcattcattcaaatcgataga 40066024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 44596976 - 44596938
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgataga 226  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  44596976 acaaaaacaaaacaatattcattaattcaaattgataga 44596938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 56156440 - 56156478
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgataga 226  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  56156440 acaaaaacaaaacgatattcattcattcaaattgataga 56156478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 8747418 - 8747450
Alignment:
Q  191 aaaactaaacaatattcattcattcaaattgat 223  Q
    |||| ||||||||||||||||||||||||||||    
T  8747418 aaaaataaacaatattcattcattcaaattgat 8747450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 226
Target Start/End: Original strand, 105710 - 105745
Alignment:
Q  191 aaaactaaacaatattcattcattcaaattgataga 226  Q
    |||| |||||||||||||||||||||||||||||||    
T  105710 aaaaataaacaatattcattcattcaaattgataga 105745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 14859791 - 14859752
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgatagaa 227  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  14859791 acaaaaacagaacaatattcattcattcaaattgatagaa 14859752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 23799740 - 23799778
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgataga 226  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  23799740 acaaaaacaaaacgatattcattcattcaaattgataga 23799778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 226
Target Start/End: Original strand, 40883542 - 40883572
Alignment:
Q  196 taaacaatattcattcattcaaattgataga 226  Q
    |||||||||||||||||||||||||||||||    
T  40883542 taaacaatattcattcattcaaattgataga 40883572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 46304313 - 46304351
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgataga 226  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  46304313 acaaaaacaaaacgatattcattcattcaaattgataga 46304351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 48401562 - 48401524
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgataga 226  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  48401562 acaaaaaataaacgatattcattcattcaaattgataga 48401524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 50981125 - 50981163
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgataga 226  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  50981125 acaaaaaataaacgatattcattcattcaaattgataga 50981163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 51084259 - 51084297
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgataga 226  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  51084259 acaaaaaataaacgatattcattcattcaaattgataga 51084297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 31462414 - 31462450
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgata 224  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  31462414 acaaaaagtaaacgatattcattcattcaaattgata 31462450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 54706393 - 54706429
Alignment:
Q  190 aaaaactaaacaatattcattcattcaaattgataga 226  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  54706393 aaaaaataaacgatattcattcattcaaattgataga 54706429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 226
Target Start/End: Complemental strand, 42491336 - 42491301
Alignment:
Q  191 aaaactaaacaatattcattcattcaaattgataga 226  Q
    |||| |||||||||||||||||||||||||||||||    
T  42491336 aaaaataaacaatattcattcattcaaattgataga 42491301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 47133202 - 47133163
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgatagaa 227  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  47133202 acaaaaacaaaacgatattcattcattcaaattgatagaa 47133163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 26535636 - 26535598
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgataga 226  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  26535636 acaaaaacaaaacgatattcattcattcaaattgataga 26535598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 27456789 - 27456751
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgataga 226  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  27456789 acaaaaacaaaacgatattcattcattcaaattgataga 27456751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 50377623 - 50377587
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgata 224  Q
    |||||||| |||| |||||||||||||||||||||||    
T  50377623 acaaaaacaaaacgatattcattcattcaaattgata 50377587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 53193 - 53229
Alignment:
Q  188 acaaaaactaaacaatattcattcattcaaattgata 224  Q
    |||||||| |||| |||||||||||||||||||||||    
T  53193 acaaaaacaaaacgatattcattcattcaaattgata 53229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University