View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8789_low_10 (Length: 253)
Name: NF8789_low_10
Description: NF8789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8789_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 5445726 - 5445489
Alignment:
| Q |
1 |
caaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcagtaggctcgttgatgatcctcatcacatt |
100 |
Q |
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| T |
5445726 |
caaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcagtaggctcgttgatgatcctcatcacatt |
5445627 |
T |
|
| Q |
101 |
aaaaccggcaatttttcctgcatcttttgtagcttgtctctgtgagttgttgaagtaggcaggaacagtgataacagcattgttcacttcatgacccaaa |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5445626 |
aaaaccggcaatttttcctgcatcatttgtagcttgtctctgtgagttgttgaagtaggcaggaacagtgataacagcattgttcacttcatgacccaaa |
5445527 |
T |
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| Q |
201 |
taagtttcagcaacttcctttaacttagacaacaccat |
238 |
Q |
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| T |
5445526 |
taagtttcagcaacttcctttaacttagacaacaccat |
5445489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 5432596 - 5432671
Alignment:
| Q |
3 |
aacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcagtaggct |
78 |
Q |
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| T |
5432596 |
aacacaagtacattcgtctcaccttctctccacattttcctatccaaagtattagcaataacagctacagtaggct |
5432671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 217
Target Start/End: Original strand, 54396653 - 54396832
Alignment:
| Q |
38 |
tttcttgtccaaaccataagcaatagcagctgcagtaggctcgttgatgatcctcatcacattaaaaccggcaatttttcctgcatcttttgtagcttgt |
137 |
Q |
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| T |
54396653 |
tttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttga |
54396752 |
T |
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| Q |
138 |
ctctgtgagttgttgaagtaggcaggaacagtgataacagcattgttcacttcatgacccaaataagtttcagcaacttc |
217 |
Q |
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| || || | ||||| || ||||||||||| | ||||||||| |||||| |||||| | | ||| |||||||||||| |
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| T |
54396753 |
cgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactggatgaccaagaaaagcttcagcaacttc |
54396832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 39985876 - 39986019
Alignment:
| Q |
38 |
tttcttgtccaaaccataagcaatagcagctgcagtaggctcgttgatgatcctcatcacattaaaaccggcaatttttcctgcatcttttgtagcttgt |
137 |
Q |
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||||||||| | |||||||||||| ||||| ||||| ||||| ||||| || | ||| ||||||| ||||||||| ||| ||||| || |||||||| |
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| T |
39985876 |
tttcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatccttggtagcttga |
39985975 |
T |
|
| Q |
138 |
ctctgtgagttgttgaagtaggcaggaacagtgataacagcatt |
181 |
Q |
| |
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| ||| |||| || ||||| ||||| ||||| | ||||||||| |
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| T |
39985976 |
cgctgggagtcattaaagtaagcagggacagtaacaacagcatt |
39986019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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