View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8789_low_11 (Length: 249)
Name: NF8789_low_11
Description: NF8789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8789_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 6555731 - 6555499
Alignment:
| Q |
1 |
cgaatcactatacaagtctctccaatgttcataattcagaaactcttgtacatgtaatctttgtcttgcacgctaaaagttgagacaaatcctatttatg |
100 |
Q |
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| T |
6555731 |
cgaatcactatacaagtctctccaatgttcataattcagaaactcttgtacatgtaatctttgacttgcacgctaaaagttgagacaaatcctatttatg |
6555632 |
T |
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| Q |
101 |
tcagtgaagcactgacacagacaccatacccgacactgacacttggtgtaacatgtttaggatttaataacaaaagacaaatgaaatggaaaacttcttg |
200 |
Q |
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| T |
6555631 |
ttagtgaagcactgacacagacaccagacccgacactgacacttggtgtaacatgtttaggatttaataacaaaagacaaatgaaatggaaaacttcttg |
6555532 |
T |
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| Q |
201 |
gcttcattgaagtattgcaacttatgtacatat |
233 |
Q |
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| T |
6555531 |
gcttcattgaagtattggaacttatgtacatat |
6555499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 49056938 - 49057003
Alignment:
| Q |
153 |
atgtttaggatttaataacaaaagac-aaatgaaatggaaaacttcttggcttcattgaagtattg |
217 |
Q |
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| T |
49056938 |
atgtttaggatttaatatccaaagaccaaatgaactggaaaacttcttgtcttcagtgaagcattg |
49057003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 49056868 - 49056910
Alignment:
| Q |
3 |
aatcactatacaagtctctccaatgttcataattcagaaactc |
45 |
Q |
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| T |
49056868 |
aatcactataaaagtcactccaatgttcatacttcagaaactc |
49056910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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