View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8789_low_12 (Length: 236)
Name: NF8789_low_12
Description: NF8789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8789_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 19608659 - 19608838
Alignment:
| Q |
23 |
cggtacaccttaatttaatggtgaactgtagaaactcccatgtattattgaaagacagggctaataaacaaaatgaaaactgaaatatagtataagcttt |
122 |
Q |
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| T |
19608659 |
cggtacaccttaatttaatggtgaaccgtagaaactcccatgtgttattgaaagacagggctaataaacaaaatgcaaactgaaatatagtataagcttt |
19608758 |
T |
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| Q |
123 |
taacaaaagtaatatgattactactagagaacaaaagacagaatcagatcagtgaaaaagtataaaaactagatgatgtaca |
204 |
Q |
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| T |
19608759 |
taacaaaagtaata--attactactagagaataaaagacagaatcagatcagtgaaaaagtataaaaactagatgatgtaca |
19608838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 52178993 - 52178953
Alignment:
| Q |
21 |
accggtacaccttaatttaatggtgaactgtagaaactccc |
61 |
Q |
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| T |
52178993 |
accggtacaccttaatttaagggtgtaccgtagaaactccc |
52178953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 2198148 - 2198190
Alignment:
| Q |
21 |
accggtacaccttaatttaatggtgaactgtagaaactcccat |
63 |
Q |
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| T |
2198148 |
accggtacaccttaatttaaaggtgtacagtagaaactcccat |
2198190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 29943921 - 29943963
Alignment:
| Q |
21 |
accggtacaccttaatttaatggtgaactgtagaaactcccat |
63 |
Q |
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| T |
29943921 |
accggtacaccttaatttaagggtgtaccgtagaaactcccat |
29943963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 45704541 - 45704501
Alignment:
| Q |
21 |
accggtacaccttaatttaatggtgaactgtagaaactccc |
61 |
Q |
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| T |
45704541 |
accggtacaccttaatttaagggtgtaccgtagaaactccc |
45704501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 46548728 - 46548768
Alignment:
| Q |
21 |
accggtacaccttaatttaatggtgaactgtagaaactccc |
61 |
Q |
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| T |
46548728 |
accggtacaccttaatttaagggtgtaccgtagaaactccc |
46548768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 54851387 - 54851427
Alignment:
| Q |
21 |
accggtacaccttaatttaatggtgaactgtagaaactccc |
61 |
Q |
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|||||||||||||||||||| |||| || |||||||||||| |
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| T |
54851387 |
accggtacaccttaatttaagggtgtaccgtagaaactccc |
54851427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 56272944 - 56272984
Alignment:
| Q |
21 |
accggtacaccttaatttaatggtgaactgtagaaactccc |
61 |
Q |
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|||||||||||||||||||| |||| || |||||||||||| |
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| T |
56272944 |
accggtacaccttaatttaagggtgtaccgtagaaactccc |
56272984 |
T |
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