View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8789_low_2 (Length: 504)

Name: NF8789_low_2
Description: NF8789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8789_low_2
NF8789_low_2
[»] chr2 (4 HSPs)
chr2 (377-497)||(14360724-14360848)
chr2 (82-127)||(14360438-14360483)
chr2 (3-47)||(6182149-6182193)
chr2 (244-302)||(14360596-14360654)
[»] chr5 (5 HSPs)
chr5 (1-79)||(17590620-17590698)
chr5 (1-54)||(36912932-36912985)
chr5 (1-54)||(17591324-17591377)
chr5 (1-54)||(36912301-36912351)
chr5 (1-51)||(39086800-39086850)
[»] chr4 (1 HSPs)
chr4 (1-54)||(19129580-19129633)
[»] chr7 (2 HSPs)
chr7 (5-54)||(14735416-14735465)
chr7 (1-54)||(14736110-14736163)
[»] chr3 (4 HSPs)
chr3 (3-51)||(32355921-32355969)
chr3 (2-44)||(25329908-25329950)
chr3 (2-42)||(42179154-42179194)
chr3 (2-42)||(43638030-43638070)
[»] scaffold1052 (1 HSPs)
scaffold1052 (3-49)||(387-433)
[»] chr8 (1 HSPs)
chr8 (2-42)||(41707370-41707410)


Alignment Details
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 377 - 497
Target Start/End: Original strand, 14360724 - 14360848
Alignment:
Q  377 gaatatgatatacttttggctttggtttcttggggagttgggattgtgaatgaaaactctttatgttcttacttcaaagccctgtgattattaatattaa 476  Q
    ||||||| |||| ||||||||||||||| || |||||||| ||||||||||  | ||| ||||||||||||||||||| | || ||||||||| ||||||    
T  14360724 gaatatggtataattttggctttggtttatttgggagttgagattgtgaatagagactttttatgttcttacttcaaaactctctgattattagtattaa 14360823  T
Q  477 gc----tttcaaacccattgaaaga 497  Q
    ||    |||||||||||||||||||    
T  14360824 gcttaatttcaaacccattgaaaga 14360848  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 14360438 - 14360483
Alignment:
Q  82 aactatggtgtccagatttaacacaatactcacaacccaagtgaca 127  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  14360438 aactatgatgtccagatttaacacaatactcacaacccaagtgaca 14360483  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 6182149 - 6182193
Alignment:
Q  3 accatttgatttaagaggaacattgatcttatgatagtctcttca 47  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||    
T  6182149 accattagatttaagatgaacattgatcttatgatagtctcttca 6182193  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 302
Target Start/End: Original strand, 14360596 - 14360654
Alignment:
Q  244 tcattgtaaaagaaaatgatgaaacttgctttagctatggaaatcatgtttctatgata 302  Q
    ||||||||||| ||||  ||||||||||||| ||| ||||||||| |||||||||||||    
T  14360596 tcattgtaaaaaaaaactatgaaacttgcttcagccatggaaatcgtgtttctatgata 14360654  T

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Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 17590620 - 17590698
Alignment:
Q  1 gaaccatttgatttaagaggaacattgatcttatgatagtctcttcacacttgannnnnnncttcactctttccctttc 79  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||       ||||||||||||||||||    
T  17590620 gaaccatttgatttaagaggaacattgatcttatgataatctcttcacacttgatttttttcttcactctttccctttc 17590698  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 36912985 - 36912932
Alignment:
Q  1 gaaccatttgatttaagaggaacattgatcttatgatagtctcttcacacttga 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36912985 gaaccatttgatttaagaggaacattgatcttatgatagtctcttcacacttga 36912932  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 17591377 - 17591324
Alignment:
Q  1 gaaccatttgatttaagaggaacattgatcttatgatagtctcttcacacttga 54  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  17591377 gaaccatttgatttaagaggaacattgatcttataatagtctcttcaaacttga 17591324  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 36912301 - 36912351
Alignment:
Q  1 gaaccatttgatttaagaggaacattgatcttatgatagtctcttcacacttga 54  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  36912301 gaaccatttgatttaaga---acattgatcttatgatagtctcttcacacttga 36912351  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 39086800 - 39086850
Alignment:
Q  1 gaaccatttgatttaagaggaacattgatcttatgatagtctcttcacact 51  Q
    ||||||||||||  ||||| |||||||||||||| |||| |||||||||||    
T  39086800 gaaccatttgataaaagagaaacattgatcttatcatagactcttcacact 39086850  T

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Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 19129580 - 19129633
Alignment:
Q  1 gaaccatttgatttaagaggaacattgatcttatgatagtctcttcacacttga 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19129580 gaaccatttgatttaagaggaacattgatcttatgatagtctcttcacacttga 19129633  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 14735416 - 14735465
Alignment:
Q  5 catttgatttaagaggaacattgatcttatgatagtctcttcacacttga 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14735416 catttgatttaagaggaacattgatcttatgatagtctcttcacacttga 14735465  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 14736163 - 14736110
Alignment:
Q  1 gaaccatttgatttaagaggaacattgatcttatgatagtctcttcacacttga 54  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14736163 gaaccatttgatttaagaggaacattgatcttatgataatctcttcacacttga 14736110  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 32355921 - 32355969
Alignment:
Q  3 accatttgatttaagaggaacattgatcttatgatagtctcttcacact 51  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  32355921 accattagatttaagatgaacattgatcttatgatagtctcttcacact 32355969  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 25329950 - 25329908
Alignment:
Q  2 aaccatttgatttaagaggaacattgatcttatgatagtctct 44  Q
    ||||||| |||||||||||||||||||| |||| |||||||||    
T  25329950 aaccattagatttaagaggaacattgattttatcatagtctct 25329908  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 42179154 - 42179194
Alignment:
Q  2 aaccatttgatttaagaggaacattgatcttatgatagtct 42  Q
    ||||||| |||||||||||||||||||| |||| |||||||    
T  42179154 aaccattagatttaagaggaacattgattttatcatagtct 42179194  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 43638070 - 43638030
Alignment:
Q  2 aaccatttgatttaagaggaacattgatcttatgatagtct 42  Q
    ||||||| |||||||||||||||||||| |||| |||||||    
T  43638070 aaccattagatttaagaggaacattgattttatcatagtct 43638030  T

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Target: scaffold1052 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold1052
Description:

Target: scaffold1052; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 387 - 433
Alignment:
Q  3 accatttgatttaagaggaacattgatcttatgatagtctcttcaca 49  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  387 accattagatttaagatgaacattgatcttatgatagtctcttcaca 433  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 41707410 - 41707370
Alignment:
Q  2 aaccatttgatttaagaggaacattgatcttatgatagtct 42  Q
    ||||||||||||||||||||||||| ||||||| |||||||    
T  41707410 aaccatttgatttaagaggaacattaatcttataatagtct 41707370  T

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