View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8789_low_3 (Length: 399)
Name: NF8789_low_3
Description: NF8789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8789_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 381
Target Start/End: Original strand, 40803313 - 40803671
Alignment:
| Q |
10 |
tgagaagaagctgatagaggaagatgatgagattaatgcaattgaaacatgaaatcttattttataatgtttgttgtgattttgatgttattttaatcgt |
109 |
Q |
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| T |
40803313 |
tgagaagaagctgaaagaggaagatgataagattaatgcaattgaaacatgaaatctt-------------tgttgtgattttgatgttattttaatcgt |
40803399 |
T |
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| Q |
110 |
aatttttattgtcgctctgggagcattgtgatgcctttatcatttggtcacctaaataaatttcatggattcaaataaaatttgctacaaatcttgtctt |
209 |
Q |
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| T |
40803400 |
aatttttattgtcgctctgggagcattgtgatgcctttatcatctggtcacctaaataaatttcaaggattcaaataaaatttgctaaatatcttgtctt |
40803499 |
T |
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| Q |
210 |
cataactcttctatcaagatatcctccttgaatttgatgctttaatgtgacaaaaataagaatttatcgcaatatttgtatatgatttaaaagataaaaa |
309 |
Q |
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| T |
40803500 |
cataactcttctatcaagatatcctccttgaatttgatactttaatgtgacaaaaataagaatttatcgcaatatttgtatatgatttaaaagataaaaa |
40803599 |
T |
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| Q |
310 |
caactttgttctagtttccattttgttttttcaattcagaggcgtgtaactttaagaatcatgagatgtttt |
381 |
Q |
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| T |
40803600 |
caactttattctagtttcaattttgttttttcaattcagaggcgtgtaactttaagaatcatgagatgtttt |
40803671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 180
Target Start/End: Complemental strand, 40676765 - 40676674
Alignment:
| Q |
89 |
ttttgatgttattttaatcgtaatttttattgtcgctctgggagcattgtgatgcctttatcatttggtcacctaaataaatttcatggatt |
180 |
Q |
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| T |
40676765 |
ttttgatgttatttaaattgcaattttgattgttgctctgagagcattgtgatgtctctttcattaggtcatcaaaataaaattcatggatt |
40676674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 290
Target Start/End: Original strand, 40705852 - 40706019
Alignment:
| Q |
123 |
gctctgggagcattgtgatgcctttatcatttggtcacctaaataaatttcatggattcaaataaaatttgctacaaatcttgtcttcataactcttcta |
222 |
Q |
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| T |
40705852 |
gctctgagagcattgtgatgcatctatcattaggtcatctaaataaaattcatggacttcaattatatgtgttataaaccttgtctttgaaattcttcca |
40705951 |
T |
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| Q |
223 |
tcaagatatcctccttgaatttgatgctttaatgtgacaaaaataagaatttatcgcaatatttgtat |
290 |
Q |
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| T |
40705952 |
taaagatatcctccttgaatttggtacttcaaagttataagagtaagaatttattgcaacattagtat |
40706019 |
T |
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