View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8789_low_4 (Length: 380)

Name: NF8789_low_4
Description: NF8789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8789_low_4
NF8789_low_4
[»] chr3 (3 HSPs)
chr3 (162-380)||(31714357-31714575)
chr3 (18-164)||(31714162-31714296)
chr3 (167-223)||(36137718-36137774)
[»] chr2 (1 HSPs)
chr2 (165-235)||(26482136-26482206)
[»] chr1 (3 HSPs)
chr1 (167-233)||(10851260-10851326)
chr1 (166-235)||(9160899-9160968)
chr1 (193-234)||(41125987-41126028)
[»] chr7 (2 HSPs)
chr7 (183-235)||(45559253-45559305)
chr7 (163-211)||(30217920-30217969)
[»] chr5 (2 HSPs)
chr5 (176-236)||(11352038-11352098)
chr5 (176-220)||(30883175-30883219)
[»] chr8 (1 HSPs)
chr8 (165-220)||(41070801-41070856)
[»] chr4 (3 HSPs)
chr4 (165-200)||(40252334-40252369)
chr4 (165-235)||(37980110-37980180)
chr4 (176-236)||(31826664-31826724)
[»] chr6 (1 HSPs)
chr6 (162-198)||(28912051-28912087)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 162 - 380
Target Start/End: Original strand, 31714357 - 31714575
Alignment:
Q  162 tgaagtgtgcttctctcaatgtctcaagttcgattctcatcagtgtcaatttcggtgggttaatttgacttcttagaagnnnnnnnnntgctgcaccata 261  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||  || ||||    
T  31714357 tgaagtgtgctcctctcaaggtctcaagttcgattctcatcagtgtcaatttcggtgggttaatttgacttcttagaaaaaaatatgctgcaccatcata 31714456  T
Q  262 tatacacatgctgtcaagtggtctcctctaatcattccgtcatcaagccctgcattttaagaatggtatacataattctaatcctaataattcaatattc 361  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  31714457 tatacacctgctgtcaagtggtctcctccaatcattccgtcatcaagccctgcattttaagaatcgtatacataattctaatcctaataattcaacattc 31714556  T
Q  362 attatgattgtatattatc 380  Q
    |||||||||||||||||||    
T  31714557 attatgattgtatattatc 31714575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 31714162 - 31714296
Alignment:
Q  18 atacttgtgatatgtaacctttccatttaataactctctcattctctcattcttagagtgcaagcaacacctttgcactaacaatccaaacatacataag 117  Q
    ||||||||||||||||||||| ||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31714162 atacttgtgatatgtaaccttcccatttaataactctc--------tcattcttagagtgcaagcaacacctttgcactaacaatccaaacatacataag 31714253  T
Q  118 ttattgattctttacattcaatgcacttttacctaatatcaatatga 164  Q
    ||||||    |||||||| ||||||||||||||||||||||||||||    
T  31714254 ttattg----tttacattgaatgcacttttacctaatatcaatatga 31714296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 36137774 - 36137718
Alignment:
Q  167 tgtgcttctctcaatgtctcaagttcgattctcatcagtgtcaatttcggtgggtta 223  Q
    ||||||| ||||||  |||||||||||||||||||| |||  ||||||||| |||||    
T  36137774 tgtgcttttctcaaaatctcaagttcgattctcatcggtgctaatttcggtaggtta 36137718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 26482136 - 26482206
Alignment:
Q  165 agtgtgcttctctcaatgtctcaagttcgattctcatcagtgtcaatttcggtgggttaatttgacttctt 235  Q
    |||||||| ||||||| |||||| ||||||||||| |||||| ||||||| ||||| ||||||| ||||||    
T  26482136 agtgtgctcctctcaaggtctcaggttcgattctcctcagtgccaatttcagtgggctaatttggcttctt 26482206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 10851326 - 10851260
Alignment:
Q  167 tgtgcttctctcaatgtctcaagttcgattctcatcagtgtcaatttcggtgggttaatttgacttc 233  Q
    ||||||| ||||||  ||||||||||||||||||||||||  |||||||||  ||||||||| ||||    
T  10851326 tgtgcttttctcaaaatctcaagttcgattctcatcagtgctaatttcggtaagttaatttggcttc 10851260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 9160968 - 9160899
Alignment:
Q  166 gtgtgcttctctcaatgtctcaagttcgattctcatcagtgtcaatttcggtgggttaatttgacttctt 235  Q
    ||||||| ||||||| ||||||  ||| |||||| || || ||||||||||||| |||||||||||||||    
T  9160968 gtgtgctcctctcaaggtctcatattcaattctcctcggtatcaatttcggtggattaatttgacttctt 9160899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 41125987 - 41126028
Alignment:
Q  193 gattctcatcagtgtcaatttcggtgggttaatttgacttct 234  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||    
T  41125987 gattctcctcaatgtcaatttcggtggattaatttgacttct 41126028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 45559253 - 45559305
Alignment:
Q  183 tctcaagttcgattctcatcagtgtcaatttcggtgggttaatttgacttctt 235  Q
    |||||||||||||||||  | ||| |||||| |||||||||||||||||||||    
T  45559253 tctcaagttcgattctccccggtgccaattttggtgggttaatttgacttctt 45559305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 30217920 - 30217969
Alignment:
Q  163 gaagtgtgcttctc-tcaatgtctcaagttcgattctcatcagtgtcaat 211  Q
    |||||||||| ||| |||| |||||||||||||||||| |||||||||||    
T  30217920 gaagtgtgctcctcctcaaggtctcaagttcgattctcttcagtgtcaat 30217969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 11352038 - 11352098
Alignment:
Q  176 ctcaatgtctcaagttcgattctcatcagtgtcaatttcggtgggttaatttgacttctta 236  Q
    ||||||||||||||||||||||||  |||||||||||| | || ||||||||  |||||||    
T  11352038 ctcaatgtctcaagttcgattctctccagtgtcaatttggatgagttaatttatcttctta 11352098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 30883219 - 30883175
Alignment:
Q  176 ctcaatgtctcaagttcgattctcatcagtgtcaatttcggtggg 220  Q
    ||||| ||||||||||| ||||||| |||||||||||| ||||||    
T  30883219 ctcaaggtctcaagttcaattctcaccagtgtcaatttgggtggg 30883175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 41070801 - 41070856
Alignment:
Q  165 agtgtgcttctctcaatgtctcaagttcgattctcatcagtgtcaatttcggtggg 220  Q
    |||||||| ||||||| |||||||||||||||| | |  |||||||||||||||||    
T  41070801 agtgtgctactctcaaggtctcaagttcgattccctttggtgtcaatttcggtggg 41070856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 200
Target Start/End: Original strand, 40252334 - 40252369
Alignment:
Q  165 agtgtgcttctctcaatgtctcaagttcgattctca 200  Q
    |||||||||||||||| |||||||||||||||||||    
T  40252334 agtgtgcttctctcaaggtctcaagttcgattctca 40252369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 37980180 - 37980110
Alignment:
Q  165 agtgtgcttctctcaatgtctcaagttcgattctcatcagtgtcaatttcggtgggttaatttgacttctt 235  Q
    |||||||| ||||||| |||||| |||||||||||  ||||||||||||| | ||| || |||| ||||||    
T  37980180 agtgtgctcctctcaaggtctcaggttcgattctccccagtgtcaatttcagcgggctagtttggcttctt 37980110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 31826664 - 31826724
Alignment:
Q  176 ctcaatgtctcaagttcgattctcatcagtgtcaatttcggtgggttaatttgacttctta 236  Q
    ||||| |||||||||||||||| | | ||||||||||| |||||| ||||||  |||||||    
T  31826664 ctcaaggtctcaagttcgattccctttagtgtcaatttgggtgggctaatttaccttctta 31826724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 28912087 - 28912051
Alignment:
Q  162 tgaagtgtgcttctctcaatgtctcaagttcgattct 198  Q
    ||||||||||||||||||  |||||||||||||||||    
T  28912087 tgaagtgtgcttctctcagagtctcaagttcgattct 28912051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University