View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8790_high_1 (Length: 463)
Name: NF8790_high_1
Description: NF8790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8790_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 257 - 445
Target Start/End: Original strand, 23700796 - 23700984
Alignment:
| Q |
257 |
gtcaattcatcatgttaatcactagcatcttaatagcataacctaaattcaagaattttaaatatttaaagattacctttttaggaaaaccaaccaaata |
356 |
Q |
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| T |
23700796 |
gtcaattcatcatgttaatcactagcatcttaatagcataacctaaattcaagaattttaaatatttaaagattacctttttaggaaaaccaaccaaata |
23700895 |
T |
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| Q |
357 |
ccttgaaagaaaatcgtgacttgctttacattagaagataaaccacaaaattgatgaacatgaatttaggaattgttcaataaaccact |
445 |
Q |
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| T |
23700896 |
cattgaaagaaaatcgtgacttgctttacattagaagataaaccacaaaattgatgaacatgaatttaggaattgttcaataaaccact |
23700984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 23700558 - 23700724
Alignment:
| Q |
19 |
tgtctaatgcgaacaagtgaatcagtcttgcaccacatctgcaccttaaataaaccaccaatgatggaaagaatctcgtgcatggttcaaactttgtctt |
118 |
Q |
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||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23700558 |
tgtctaatgcgaataagtgaatcagtcttgcactacgtctgcaccttaaataaaccaccaatgatggaaagaatcttgtgcatggttcaaactttgtctt |
23700657 |
T |
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| Q |
119 |
ccttttacatcataaacttgacctaaaataagcaatttagttttctatactctctcgagtttggtac |
185 |
Q |
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| T |
23700658 |
ccttttacatcataaacttgacctaaaataaccaatttagttttctatactctctcgagtttggtac |
23700724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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