View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8790_high_4 (Length: 349)

Name: NF8790_high_4
Description: NF8790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8790_high_4
NF8790_high_4
[»] chr2 (2 HSPs)
chr2 (1-149)||(43900351-43900499)
chr2 (214-330)||(43900130-43900246)
[»] chr8 (3 HSPs)
chr8 (1-77)||(1251614-1251690)
chr8 (13-75)||(31273712-31273774)
chr8 (13-73)||(24576210-24576270)
[»] chr3 (3 HSPs)
chr3 (7-76)||(3785858-3785927)
chr3 (7-76)||(3823547-3823616)
chr3 (12-75)||(31545423-31545486)
[»] chr4 (2 HSPs)
chr4 (1-72)||(16583496-16583567)
chr4 (1-74)||(33179897-33179970)
[»] chr5 (3 HSPs)
chr5 (1-75)||(31189473-31189547)
chr5 (1-73)||(33959117-33959189)
chr5 (12-77)||(36169482-36169546)
[»] chr7 (4 HSPs)
chr7 (13-77)||(18312722-18312786)
chr7 (1-76)||(20556662-20556737)
chr7 (12-74)||(31303351-31303413)
chr7 (43-75)||(28805203-28805235)
[»] chr1 (2 HSPs)
chr1 (1-61)||(13350894-13350954)
chr1 (1-67)||(34490094-34490160)
[»] chr6 (2 HSPs)
chr6 (1-71)||(23595055-23595125)
chr6 (43-72)||(3222332-3222361)


Alignment Details
Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 43900499 - 43900351
Alignment:
Q  1 tatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattctttgctccaaccgaattaattaaatg 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  43900499 tatttagttacctgaaattttcgagagtggtacaaaatgatctacacattaaaagtgtctatcaatctttattctttgctccaaccgaattaattaaatg 43900400  T
Q  101 cacaaaaatgcatagattcactaatgaaaaatgccgtccgtggggtatc 149  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43900399 cacaaaaatacatagattcactaatgaaaaatgccgtccgtggggtatc 43900351  T

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Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 214 - 330
Target Start/End: Complemental strand, 43900246 - 43900130
Alignment:
Q  214 tgcaatttggtgttaagaaaatgaatacagtattatcctttttctgtttggattttaagatcttcagttgattgatatgaaaagctaaaactaagcttag 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43900246 tgcaatttggtgttaagaaaatgaatacagtattatcctttttctgtttggattttaagatcttcagttgattgatatgaaaagctaaaactaagcttag 43900147  T
Q  314 actctcaacctttgcca 330  Q
    |||||||||||||||||    
T  43900146 actctcaacctttgcca 43900130  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 1251614 - 1251690
Alignment:
Q  1 tatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattcttt 77  Q
    |||||||||| ||||||||||||||||||||| |||  | | |||||||||||| |||||| |||||||||||||||    
T  1251614 tatttagttaactgaaattttcgagagtggtacaaatgggtgtacacattaaggatgtctaccaatctttattcttt 1251690  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 31273712 - 31273774
Alignment:
Q  13 tgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattct 75  Q
    |||||||||||||||||||| |||| | | ||||||||||| || |||| |||||||||||||    
T  31273712 tgaaattttcgagagtggtacaaaaaggtatacacattaagagtatctaccaatctttattct 31273774  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 24576210 - 24576270
Alignment:
Q  13 tgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttatt 73  Q
    |||||||||||||||||||| |||  | | ||||||||| ||||||||| |||||||||||    
T  24576210 tgaaattttcgagagtggtacaaaggggtgtacacattacgggtgtctaccaatctttatt 24576270  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 3785927 - 3785858
Alignment:
Q  7 gttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattctt 76  Q
    |||| ||||||||||||||||||||| |||  | | ||||||||||||||||||| ||||||||||||||    
T  3785927 gttaactgaaattttcgagagtggtacaaaggggtgtacacattaagggtgtctaccaatctttattctt 3785858  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 3823616 - 3823547
Alignment:
Q  7 gttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattctt 76  Q
    |||| ||||||||||||||||||||| |||  | | |||||||||||||||||||  |||||||||||||    
T  3823616 gttaactgaaattttcgagagtggtacaaaggggtgtacacattaagggtgtctactaatctttattctt 3823547  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 31545486 - 31545423
Alignment:
Q  12 ctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattct 75  Q
    ||||||||||||||||| ||| |||  ||| |||||||||| |||||||| |||||||||||||    
T  31545486 ctgaaattttcgagagtagtacaaagggatatacacattaaaggtgtctaccaatctttattct 31545423  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 16583567 - 16583496
Alignment:
Q  1 tatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttat 72  Q
    ||||| |||| ||||||||||||||||||||| |||  ||| ||| ||||||||||||||| ||||||||||    
T  16583567 tatttggttaactgaaattttcgagagtggtacaaagggatgtacgcattaagggtgtctaccaatctttat 16583496  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 33179897 - 33179970
Alignment:
Q  1 tatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattc 74  Q
    ||||||||||  | |||||||||| |||||||||||   || |||||||||||| |||||| ||||| ||||||    
T  33179897 tatttagttaattaaaattttcgatagtggtataaagaaatatacacattaaggatgtctaccaatcattattc 33179970  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 31189547 - 31189473
Alignment:
Q  1 tatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattct 75  Q
    ||||| |||| ||||||||||||||||||||| |||||| | |||| ||||| |||||||  |||||||||||||    
T  31189547 tatttggttaactgaaattttcgagagtggtacaaaatgttgtacatattaaaggtgtctgccaatctttattct 31189473  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 33959117 - 33959189
Alignment:
Q  1 tatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttatt 73  Q
    ||||| |||| ||||| ||||||||| |||||||||   || |||||||||||||||||||  ||||||||||    
T  33959117 tattttgttaactgaagttttcgagaatggtataaaggaatatacacattaagggtgtctactaatctttatt 33959189  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 36169482 - 36169546
Alignment:
Q  12 ctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattcttt 77  Q
    |||||||||| ||||||||| ||||| ||| || ||||||| | |||||| |||||||||||||||    
T  36169482 ctgaaatttttgagagtggtgtaaaa-gatgtatacattaaagatgtctagcaatctttattcttt 36169546  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 18312786 - 18312722
Alignment:
Q  13 tgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattcttt 77  Q
    |||||||||||||||||||| |||  | | ||||| ||||||||||||| |||||||||||||||    
T  18312786 tgaaattttcgagagtggtacaaaggggtatacacgttaagggtgtctaccaatctttattcttt 18312722  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 20556737 - 20556662
Alignment:
Q  1 tatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattctt 76  Q
    ||||| |||| |||||||||||||||||   | |||  ||| ||||||||||||||||||| | ||||||||||||    
T  20556737 tatttggttaactgaaattttcgagagtaacacaaagagatatacacattaagggtgtctaccgatctttattctt 20556662  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 31303413 - 31303351
Alignment:
Q  12 ctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattc 74  Q
    ||||||||||  |||||| || |||  ||| ||||||||||||||||||| ||||||||||||    
T  31303413 ctgaaatttttcagagtgatacaaatggatgtacacattaagggtgtctaccaatctttattc 31303351  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 28805203 - 28805235
Alignment:
Q  43 tacacattaagggtgtctatcaatctttattct 75  Q
    ||||||||||||||||||| |||||||||||||    
T  28805203 tacacattaagggtgtctaccaatctttattct 28805235  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 13350954 - 13350894
Alignment:
Q  1 tatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtcta 61  Q
    ||||| |||| ||||||||||||||||||||| |||| | | |||||||||||| ||||||    
T  13350954 tatttggttaactgaaattttcgagagtggtacaaaagggtgtacacattaaggatgtcta 13350894  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 34490160 - 34490094
Alignment:
Q  1 tatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatc 67  Q
    |||||||||| ||||||||||  | |||||||  ||| ||| ||||||||||||||||||| |||||    
T  34490160 tatttagttaactgaaattttacatagtggtaccaaaagatatacacattaagggtgtctaccaatc 34490094  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 23595125 - 23595055
Alignment:
Q  1 tatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatcttta 71  Q
    |||||||||| || ||||||||||||||| || |||| | | |||||||||| |||||||  |||||||||    
T  23595125 tatttagttaacttaaattttcgagagtgatacaaaagggtgtacacattaaaggtgtctcccaatcttta 23595055  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 3222361 - 3222332
Alignment:
Q  43 tacacattaagggtgtctatcaatctttat 72  Q
    ||||||||||||||||||||||||||||||    
T  3222361 tacacattaagggtgtctatcaatctttat 3222332  T

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