View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8790_high_5 (Length: 257)
Name: NF8790_high_5
Description: NF8790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8790_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 14150464 - 14150685
Alignment:
| Q |
20 |
tggtggtcaatctgtagaaatgggaacaactcatattggggactttatgggacgattttgttcgaatcttggtatgaatcatcaagctgttaaagctgct |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14150464 |
tggtggtcaatctgtagaaatgggaacaactcatattggggactttatgggacgattttgttcgaatcttggtatgaatcatcaagctgttaaagctgct |
14150563 |
T |
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| Q |
120 |
aatgaatctgttcacaattcagaagaatttgatataaggagaagtcccatatcaattgctgcaacagttatatacatcataactcagctttcagatgata |
219 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14150564 |
aatgaatctgttcagaattcagaagaatttgatataaggagaagtcccatatcaattgctgcaacagttatatacatcataactcagctttcagatgata |
14150663 |
T |
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| Q |
220 |
aaaaatccctcaaagatatatc |
241 |
Q |
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|||||||||| ||||||||||| |
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| T |
14150664 |
aaaaatccctgaaagatatatc |
14150685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 14075053 - 14075274
Alignment:
| Q |
20 |
tggtggtcaatctgtagaaatgggaacaactcatattggggactttatgggacgattttgttcgaatcttggtatgaatcatcaagctgttaaagctgct |
119 |
Q |
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||||||||||||| | |||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14075053 |
tggtggtcaatctattgaaatgggaataattcatattggggactttatgggacgattttgttctaatcttggtatgaatcatcaagctgttaaagctgct |
14075152 |
T |
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| Q |
120 |
aatgaatctgttcacaattcagaagaatttgatataaggagaagtcccatatcaattgctgcaacagttatatacatcataactcagctttcagatgata |
219 |
Q |
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| T |
14075153 |
acggaatctgttcagaattcagaagaatttgatataaggagaagtcccatatcaattgctgcaacagttatatacatcataactcatctttcggatgata |
14075252 |
T |
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| Q |
220 |
aaaaatccctcaaagatatatc |
241 |
Q |
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|||||||||| | ||||||||| |
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| T |
14075253 |
aaaaatccctgagagatatatc |
14075274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 13609996 - 13610217
Alignment:
| Q |
20 |
tggtggtcaatctgtagaaatgggaacaactcatattggggactttatgggacgattttgttcgaatcttggtatgaatcatcaagctgttaaagctgct |
119 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13609996 |
tggtggtcaatctgtagaaatgggaacaattcatgctggggactttatgagacgattttgttctaatcttggtatgaatcatcaagctgttaaagctgct |
13610095 |
T |
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| Q |
120 |
aatgaatctgttcacaattcagaagaatttgatataaggagaagtcccatatcaattgctgcaacagttatatacatcataactcagctttcagatgata |
219 |
Q |
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| ||||||||| | || ||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||||||| |
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| T |
13610096 |
caggaatctgttaagaaatcagaggaatttgatataaggagaagtcccataacaattgctgcagcagttatatacatcattactcagctttctgatgata |
13610195 |
T |
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| Q |
220 |
aaaaatccctcaaagatatatc |
241 |
Q |
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||||| | || ||||||||||| |
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| T |
13610196 |
aaaaacctctgaaagatatatc |
13610217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 7591676 - 7591779
Alignment:
| Q |
138 |
tcagaagaatttgatataaggagaagtcccatatcaattgctgcaacagttatatacatcataactcagctttcagatgataaaaaatccctcaaagata |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| | |||||||||||||||||||||| | |||||||||| |
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| T |
7591676 |
tcagaagaatttgatataaggagaagtcccatatcaaatgctgcagcagttatatacatcattattcagctttcagatgataaaaaacctctcaaagata |
7591775 |
T |
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| Q |
238 |
tatc |
241 |
Q |
| |
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|||| |
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| T |
7591776 |
tatc |
7591779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 22089230 - 22089162
Alignment:
| Q |
156 |
aggagaagtcccatatcaattgctgcaacagttatatacatcataactcagctttcagatgataaaaaa |
224 |
Q |
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||||| ||||| ||| |||||||||| ||||||||||||||||| |||||||||| | |||||||||| |
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| T |
22089230 |
aggaggagtcctataacaattgctgctgcagttatatacatcatatctcagctttctggtgataaaaaa |
22089162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 36012301 - 36012213
Alignment:
| Q |
70 |
gacgattttgttcgaatcttggtatgaatcatcaagctgttaaagctgctaatgaatctgttcacaattcagaagaatttgatataagg |
158 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||| || || |||||||||||||||||| |
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| T |
36012301 |
gacgattttgttctaatcttggtatgaatcatcaagctgttaaagctgctcaggaatctgttcagaaatccgaagaatttgatataagg |
36012213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 36011363 - 36011285
Alignment:
| Q |
156 |
aggagaagtcccatatcaattgctgcaacagttatatacatcataactcagctttcagatgataaaaaatccctcaaag |
234 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||| | ||||||| |
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| T |
36011363 |
aggagaagtcccatatcaattgctgcagcagttatatacatcattactcagctctcagatgataaaaaacctctcaaag |
36011285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 36012471 - 36012426
Alignment:
| Q |
24 |
ggtcaatctgtagaaatgggaacaactcatattggggactttatgg |
69 |
Q |
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||||||||||| ||||||||||||| |||| |||||||||||||| |
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| T |
36012471 |
ggtcaatctgttgaaatgggaacaattcatgctggggactttatgg |
36012426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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