View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8790_high_6 (Length: 234)
Name: NF8790_high_6
Description: NF8790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8790_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 11849504 - 11849289
Alignment:
| Q |
1 |
tgaaacctatggatccgagacttgatgaaacccctacacatttgtcacaataaattaggagattatgaaaacatagtggtgactggtgagtgtaattgag |
100 |
Q |
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| T |
11849504 |
tgaaacctatggatccgagacttgatgaaacccctacacatttgtcacaataaattaggagattatgaaaacatagtggtgactggtgagtgtaattgag |
11849405 |
T |
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| Q |
101 |
aactgttatttgtaaaactcacactaagtacggagaagtggagaactgcgggtttagacccgcacgtcagcatatcaaatatcccaataacattttacca |
200 |
Q |
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| T |
11849404 |
agctgttaattgcaaaactcacactaagtacggagaagtggagaactgtgggtttagacccgcacgtctgcatatcaaatatcccaataacattttacca |
11849305 |
T |
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| Q |
201 |
tatgagtggtacttat |
216 |
Q |
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|||||||||||||||| |
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| T |
11849304 |
tatgagtggtacttat |
11849289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 11844775 - 11844560
Alignment:
| Q |
1 |
tgaaacctatggatccgagacttgatgaaacccctacacatttgtcacaataaattaggagattatgaaaacatagtggtgactggtgagtgtaattgag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11844775 |
tgaaacctatggatccgagacttgatgaaacccctacacatttgtcacagtaaattaggagattatgaaaacatagtggtgactggtgagtgtaattgag |
11844676 |
T |
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| Q |
101 |
aactgttatttgtaaaactcacactaagtacggagaagtggagaactgcgggtttagacccgcacgtcagcatatcaaatatcccaataacattttacca |
200 |
Q |
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| T |
11844675 |
agctgttaattgcaaaactcaccctaagtacggagaagtggagaactgtgggtttagacccgcacgtctgcatatcaaatatcccaataacattttacca |
11844576 |
T |
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| Q |
201 |
tatgagtggtacttat |
216 |
Q |
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|||||||||||||||| |
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| T |
11844575 |
tatgagtggtacttat |
11844560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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