View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8790_low_11 (Length: 212)
Name: NF8790_low_11
Description: NF8790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8790_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 66 - 200
Target Start/End: Original strand, 9737368 - 9737501
Alignment:
| Q |
66 |
aaacaaacgccccttaacagataatcaaaaactgaatcaaactcacacccacagcacaaccaagtgcacctgtgtacaaccatgaaaccaaattgcataa |
165 |
Q |
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| T |
9737368 |
aaacaaacacccct-aacaaataatcaaaaactgaatcaaactcacacccacaacacaaccaagtgcacttatgtacaaccatgaaaccaaattgcataa |
9737466 |
T |
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| Q |
166 |
aatgagatatatgtaaacatttgcgaactccaaac |
200 |
Q |
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| T |
9737467 |
aatgagatatacgtaaacatttgcgaactccaaac |
9737501 |
T |
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Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 35442988 - 35443042
Alignment:
| Q |
19 |
atttaaccacttattttacataaatatatgtatttttagcattttgtaaacaaac |
73 |
Q |
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| T |
35442988 |
atttaaccacttattttaaataaatatatgtatttttagcattttgtaaccaaac |
35443042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 16780358 - 16780329
Alignment:
| Q |
24 |
accacttattttacataaatatatgtattt |
53 |
Q |
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| T |
16780358 |
accacttattttacataaatatatgtattt |
16780329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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