View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8790_low_2 (Length: 412)
Name: NF8790_low_2
Description: NF8790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8790_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 14 - 398
Target Start/End: Complemental strand, 36263937 - 36263553
Alignment:
| Q |
14 |
ggacatcatgattactgtaccagttaactgttattgctccggtcactactaccagcataattcctcatacacattgaagactgaggatgaaaactacttc |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36263937 |
ggacaccatgattactgtaccagttaactgttattgctccggtcactactaccagcataattcctcatacacattgaagactgaggatgaaaactacttc |
36263838 |
T |
|
| Q |
114 |
actcttgccaataacacctatgagtcactcacaacatgtcaggctcttgatgctcagaatatatatggactcacaaacctcactgcagggctcaatatgc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36263837 |
actcttgccaataacacctatgagtcactcacaacatgtcaggctcttgatgctcagaatatatatggactcacaaacctcactgcagggctcaatatgc |
36263738 |
T |
|
| Q |
214 |
atgttccactcaggtgtgcttgtcctacctccaagcaaattgaaaatggattcaagtatattcttacatacctggtctccgaaggagaatatcctgaact |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36263737 |
atgttccactcaggtgtgcttgtcctacctccaagcaaattgaaaatggattcaagtatattcttacatacctggtctccgaaggagaatatcctgaact |
36263638 |
T |
|
| Q |
314 |
tattgctgagatttttggggttgattcacagagcgtcttggatgcaaacaagcttattgaggatcaagttatcttctacttcact |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36263637 |
tattgctgagatttttggggttgattcacagagcgtcttggatgcaaacaagcttattgaggatcaagttatcttctacttcact |
36263553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 36256041 - 36255909
Alignment:
| Q |
202 |
ggctcaatatgcatgttccactcagg--tgtgcttgtcctacctccaagcaaattgaaaatggattcaagtatattcttacatacctggtctccgaagga |
299 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| | | |||||||||||| |||||||||||||||||| ||||| ||||| ||||||| |||||| |
|
|
| T |
36256041 |
ggctcaatttgcatgttccactcaggggtgtgcttggtccatctccaagcaaatggaaaatggattcaagtatcttcttgcatacttggtctctgaagga |
36255942 |
T |
|
| Q |
300 |
----gaatatcctgaacttattgctgagatttt |
328 |
Q |
| |
|
||||||||||||||||||| |||| |||| |
|
|
| T |
36255941 |
gaatgaatatcctgaacttattgatgagctttt |
36255909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 36256134 - 36256049
Alignment:
| Q |
54 |
ggtcactactaccagcataattcctcatacacattgaagactgaggatgaaaacta--cttcactcttgccaataacacctatgag |
137 |
Q |
| |
|
|||||| ||| | |||| ||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36256134 |
ggtcaccacttctagcacaattcctgatacatcttgaaaactgaggatgaaaactatacttcactcttgccaataacacctatgag |
36256049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University