View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8790_low_3 (Length: 407)
Name: NF8790_low_3
Description: NF8790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8790_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 24669873 - 24669483
Alignment:
| Q |
18 |
gttggtagtttggatgatcatgcccatggtattgtgtta-ctcataagttaagtaaaacctaacaaaatgatatttaatcatgctttgaactctataaat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24669873 |
gttggtagtttggatgatcatgcccatggtattgtgttaactcaaaagttaagtaaaacctaacaaaatgatatttaatcatgctttgaacactataaat |
24669774 |
T |
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| Q |
117 |
actaaaattgattcgtaaatactcatcaacaaaaagttattaaacattcgagttcaaccacttcttcactcaccttggtatattaatttgaccaaacatg |
216 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24669773 |
actaaaattgattcgtaaatactcattaacaaaaagttattaaacattcgagttcaaccacttcttcactcaccttggtatattaatttgaccaagcatg |
24669674 |
T |
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| Q |
217 |
gtttccattttcagcctctttcttcttttcaataattacttcacgaatgttcatggaagagtggtgtctttagaagaatcccatataagtttaccctcag |
316 |
Q |
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||||||||||||| |||||| |||||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24669673 |
gtttccattttcatcctcttgcttcttttcagtaattacttcatgagtgttcatggaagagtggtgtctttagcagaatcccatataagtttaccctcag |
24669574 |
T |
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| Q |
317 |
aaaaactataaagttttactcacatacacttttattttcatgacatcttagatggtgaaaaaccaactacactcagaattatctacccacc |
407 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| ||||||| |
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| T |
24669573 |
aaaaactacaaagttctactcacatacacttttattttcatgacatcctagatggtgaaaaaccaactacgctcaaaattatcaacccacc |
24669483 |
T |
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