View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8790_low_6 (Length: 311)
Name: NF8790_low_6
Description: NF8790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8790_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 46577836 - 46577710
Alignment:
| Q |
18 |
aaaggttaggtgtgtaaataataacttttgattcattttaactaaaacaattagagttgattgagcaaacccaagaactggaaaagttaaaattgaaaga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
46577836 |
aaaggttaggtgtgtaaataataacttttgattcattttaactaaaacaattagagttgattcagcaaacccaagaaccggaaaagttaaaattgaaaga |
46577737 |
T |
|
| Q |
118 |
aaagattgtagcattaaatcagcaaca |
144 |
Q |
| |
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|||||| ||||||| |||||||||||| |
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| T |
46577736 |
aaagatcgtagcatcaaatcagcaaca |
46577710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 50183532 - 50183406
Alignment:
| Q |
18 |
aaaggttaggtgtgtaaataataacttttgattcattttaactaaaacaattagagttgattgagcaaacccaagaactggaaaagttaaaattgaaaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
50183532 |
aaaggttaggtgtgtaaataataacttttgattcattttaactaaaacaattagagttgattcagcaaacccaagaaccggaaaagttaaaattgaaaga |
50183433 |
T |
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| Q |
118 |
aaagattgtagcattaaatcagcaaca |
144 |
Q |
| |
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|||||| ||||||| |||||||||||| |
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| T |
50183432 |
aaagatcgtagcatcaaatcagcaaca |
50183406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 179 - 295
Target Start/End: Complemental strand, 50183353 - 50183237
Alignment:
| Q |
179 |
aatgaagaaaggaaaggaaaggaaaggtcgcacaagcaaatgagggtggcgaaaagtttggatgcagttattaaaattcaataccatggtaaagattaat |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50183353 |
aatgaagaaaggaaaggaaaggaaaggtcgcacaagcaaatgagggtggcgaaaagtttggatgcagttattaaaattcaataccattgtaaagattaat |
50183254 |
T |
|
| Q |
279 |
tcaagggctaggattca |
295 |
Q |
| |
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|||||||||||||||| |
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| T |
50183253 |
ccaagggctaggattca |
50183237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 179 - 295
Target Start/End: Complemental strand, 46577661 - 46577545
Alignment:
| Q |
179 |
aatgaagaaaggaaaggaaaggaaaggtcgcacaagcaaatgagggtggcgaaaagtttggatgcagttattaaaattcaataccatggtaaagattaat |
278 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
46577661 |
aatgaagaaaggaaaggaaaggaaaggtcgcacaagcaaatgagggtggcgaaaagttcagttgcagttattaaaattcaataccatggtaaagattaat |
46577562 |
T |
|
| Q |
279 |
tcaagggctaggattca |
295 |
Q |
| |
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||||| ||||||||| |
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| T |
46577561 |
ctaagggttaggattca |
46577545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 179 - 295
Target Start/End: Original strand, 17174179 - 17174295
Alignment:
| Q |
179 |
aatgaagaaaggaaaggaaaggaaaggtcgcacaagcaaatgagggtggcgaaaagtttggatgcagttattaaaattcaataccatggtaaagattaat |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17174179 |
aatgaagaaaggaaaggaaaggaaaggtcgcacaagcaaatgagggtggcgaaaagtttggatgcagttattaaaattcaataccatggtaaatattaat |
17174278 |
T |
|
| Q |
279 |
tcaagggctaggattca |
295 |
Q |
| |
|
||| |||||||||||| |
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|
| T |
17174279 |
ccaatggctaggattca |
17174295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 17174014 - 17174139
Alignment:
| Q |
18 |
aaaggttaggtgtgtaaataataacttttgattcattttaactaaaacaattagagttgattgagcaaacccaagaactggaaaagttaaaattgaaaga |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||| |
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| T |
17174014 |
aaagcttaggtgtgtaaataataacttttgattcattttaactaaaacaattagagttgattcaacaaacctaagaactggaaaagttaaaattgaaaga |
17174113 |
T |
|
| Q |
118 |
aaagattgtagcattaaatcagcaac |
143 |
Q |
| |
|
|||||| ||||||| ||||||||||| |
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|
| T |
17174114 |
aaagatcgtagcatcaaatcagcaac |
17174139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 195 - 295
Target Start/End: Original strand, 15894532 - 15894632
Alignment:
| Q |
195 |
gaaaggaaaggtcgcacaagcaaatgagggtggcgaaaagtttggatgcagttattaaaattcaataccatggtaaagattaattcaagggctaggattc |
294 |
Q |
| |
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|||||||||||||||||| ||||||||||||| |||||||||||||| | |||| |||| |||||| |||||||||||||||| ||||| |||||||| |
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| T |
15894532 |
gaaaggaaaggtcgcacatgcaaatgagggtgacgaaaagtttggatacggttactaaatgtcaatatcatggtaaagattaatctaagggttaggattc |
15894631 |
T |
|
| Q |
295 |
a |
295 |
Q |
| |
|
| |
|
|
| T |
15894632 |
a |
15894632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 15894362 - 15894484
Alignment:
| Q |
18 |
aaaggttaggtgtgtaaataataac-ttttgattcattttaactaaaacaattagagttgattgagcaaa---------cccaagaactggaaaagttaa |
107 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||| ||||||| |||||||||| |||||||| |||||| |||||||| |||||||||||| |
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|
| T |
15894362 |
aaagtttaggtgtgtaaataataacgtttaaattcgttttaaccaaaacaattacagttgattcagcaaacaagcatcgcccaagaattggaaaagttaa |
15894461 |
T |
|
| Q |
108 |
aattgaaagaaaagattgtagca |
130 |
Q |
| |
|
|||||||||| |||| ||||||| |
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|
| T |
15894462 |
aattgaaagagaagactgtagca |
15894484 |
T |
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