View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8791_high_1 (Length: 434)
Name: NF8791_high_1
Description: NF8791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8791_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 41 - 400
Target Start/End: Complemental strand, 34526771 - 34526424
Alignment:
| Q |
41 |
tcaaattccatgtttcacgaaacactcttctctcatcactggtcgcgacggaaacagtttttccagcaaacctctttctttctcaaattatcgatcatcc |
140 |
Q |
| |
|
||||||||||||||| || |||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34526771 |
tcaaattccatgttttaccaaacacacttctctcatcactggtcgcgccggaaacagtttttccagcaaacctgtttctttctcaaattatcgatcatct |
34526672 |
T |
|
| Q |
141 |
aagtttcaaacctgtcaaatttctccccaaacacaatctacaaccgcgccctatgaagctgaacgaagtgaagggtctatcgattcatccccaccaatga |
240 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||| ||| ||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34526671 |
aagttccaaacctgtcaaatttctcagcaaactcaa------------cccaatggagctgaacgaagtgaagggtctaccgattcatccccaccaatga |
34526584 |
T |
|
| Q |
241 |
atcatctcttgtttgttgagatgggtgttggttacgatcaacacggccaagatattactgctgcagcaacaagagcgtgcagggatgctattacttctaa |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34526583 |
atcatctcttgtttgttgagatgggtgttggttacgatcaacacggccaagatattactgctgcagcaacaagagcgtgcagggatgctattacttctaa |
34526484 |
T |
|
| Q |
341 |
ttcaattcccgcttttcgcagaggtattcatcttttcttgtgttttcagtttggattgac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34526483 |
ttcaattcccgcttttcgcagaggtattcatcttttcttgtgttttcagtttggattgac |
34526424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 235 - 366
Target Start/End: Complemental strand, 34523645 - 34523514
Alignment:
| Q |
235 |
caatgaatcatctcttgtttgttgagatgggtgttggttacgatcaacacggccaagatattactgctgcagcaacaagagcgtgcagggatgctattac |
334 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| || || ||||||||||||||| |||| ||| ||||||||| ||||| ||||||||||||||| | |
|
|
| T |
34523645 |
caatgaatcatctcttgtttgtagagatgggtgtcggctatgatcaacacggccaaaatatcacttctgcagcaatgagagcatgcagggatgctatttc |
34523546 |
T |
|
| Q |
335 |
ttctaattcaattcccgcttttcgcagaggta |
366 |
Q |
| |
|
|||||||||||| || ||||| |||||||||| |
|
|
| T |
34523545 |
ttctaattcaatccctgctttccgcagaggta |
34523514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University