View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8791_high_2 (Length: 412)
Name: NF8791_high_2
Description: NF8791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8791_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 3 - 394
Target Start/End: Original strand, 43698824 - 43699209
Alignment:
| Q |
3 |
atacatcaaacccaccttcatctttatcatcaaccgccgacgtaaccaaatgacccaaatccggtacactcaaattccctttccctttccctttcaaatt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43698824 |
atacatcaaacccaccttcatctttatcatcaaccgccgacgtaaccaaatgactcaaatccggtacactcaaattcc------ctttccctttcaaatt |
43698917 |
T |
|
| Q |
103 |
tctacaatcccacgacatagcccaacaaattgaaagcaagagaaacacatgcttggggagaaggtacccgctaaccttacaatcaacatcatcagattca |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43698918 |
tctacaatcccacgacatagcccaacaaattgaaagcaagagaaacacatgcttggggagaaggtacccgctaaccttacaatcaacatcatcagattca |
43699017 |
T |
|
| Q |
203 |
aattccaaatgaacatccaaattcgcttttttagtaacatcaacgaatactctaacgaacttgttcagaaaaatcgatgcagaaacccttgaacaacact |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43699018 |
aattccaaatgaacatccaaattcgcttttttagtaacatcaacgaatactctaatgaacttgttcagaaaaatcgatgcagaaacccttgaacaacact |
43699117 |
T |
|
| Q |
303 |
tgttatagcctttcacaaattcaacccagtttattccattttcatcagaaatgaaaaattgatcaactaaagatgaacctaagtgatccaat |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43699118 |
tgttatagcctttcacaaattcaacccagtttattccattatcatcagaaatgaaaaattgatcaactaaagatgaacctaagtgatccaat |
43699209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 37 - 394
Target Start/End: Complemental strand, 39526798 - 39526447
Alignment:
| Q |
37 |
cgccgacgtaaccaaatgacccaaatccggtacactcaaattccctttccctttccctttcaaatttctacaatcccacgacatagcccaacaaattgaa |
136 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
39526798 |
cgccgacaaaaccaaatgagtcaaatccggtacactcaaattccctttccctttc------aaatttctacaatcctatgacatagcccaacaaattgaa |
39526705 |
T |
|
| Q |
137 |
agcaagagaaacacatgcttggggagaaggtacccgctaaccttacaatcaacatcatcagattcaaattccaaatgaacatccaaattcgcttttttag |
236 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
39526704 |
agcaagagaaacacatgcttggggagaagatacccgctaaccttgcaatcgacatcatcagattcaaattccgaatgattatccaaatttgctttttatc |
39526605 |
T |
|
| Q |
237 |
taacatcaacgaatactctaacgaacttgttcagaaaaatcgatgcagaaacccttgaacaacacttgttatagcctttcacaaattcaacccagtttat |
336 |
Q |
| |
|
||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39526604 |
taacatcaacgaacactctgataaacttgttcagaaaaatcgatgcagaaacccgagaacagcacttgttatagcctttcacaaattcaacccaatttat |
39526505 |
T |
|
| Q |
337 |
tccattttcatcagaaatgaaaaattgatcaactaaagatgaacctaagtgatccaat |
394 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39526504 |
tccatttgcatcagatatgaaaaattgatcaactaaagatgaacctaagtgatccaat |
39526447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University