View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8791_high_3 (Length: 316)
Name: NF8791_high_3
Description: NF8791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8791_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 33965990 - 33965703
Alignment:
| Q |
14 |
agacacaattgaccgaactccataatcaaatctcgtgtgttctctgtttgtatttttcgtatctatttttcttttgagccaaggtttctcttctaatagt |
113 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33965990 |
agacacaattgaccgaactccacaatcaaatcttgtgtgttctttgtttgtatttttcatatcgatttttctttcgagccaaggtttctcttctaatagt |
33965891 |
T |
|
| Q |
114 |
ttgtgtgtgtttt-gtgtttagggagaaagttaacattcctcctttaaaatccttcataaccatagaaggagatggtgcagatacaacaattgttcaatg |
212 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33965890 |
ttgtgtgtgtttttgtgtctagggagaaagttaacattcctcctttaaaatccttcataaccatagaaggagatggtgcagatacaacaattgttcaatg |
33965791 |
T |
|
| Q |
213 |
gggtgacactgctgcaacacctggtccaagagggaatccattgggaacatatggttcagcaacttttgcagttaattcaccttatttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33965790 |
gggtgacactgctgcaacacctggtccaagagggaatccattgggaacatatggttcagcaacttttgcagttaattcaccttatttc |
33965703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 1664242 - 1664186
Alignment:
| Q |
14 |
agacacaattgaccgaactccataatcaaatctcgtgtgttctctgtttgtattttt |
70 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| ||| ||||||| |||||||||| |
|
|
| T |
1664242 |
agacacaattggccgaactccatgatcaaatctcttgtattctctgattgtattttt |
1664186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 43077255 - 43077344
Alignment:
| Q |
136 |
gagaaagttaacattcctcctttaaaatccttcataaccatagaaggagatggtgcagatacaacaattgttcaatggggtgacactgct |
225 |
Q |
| |
|
|||||||||| ||||||| | |||||||| |||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43077255 |
gagaaagttagcattcctgcattaaaatcattcataaccatacaaggagcaggtgcagataaaacaattgttcaatggggtgacactgct |
43077344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 43077381 - 43077425
Alignment:
| Q |
256 |
ggaacatatggttcagcaacttttgcagttaattcaccttatttc |
300 |
Q |
| |
|
||||| |||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
43077381 |
ggaacttatggttcggcaacttttgcagtgaattcaccttatttc |
43077425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 11319460 - 11319509
Alignment:
| Q |
28 |
gaactccataatcaaatctcgtgtgttctctgtttgtatttttcgtatct |
77 |
Q |
| |
|
||||||| | ||||||||||||||||||| || |||| |||||||||||| |
|
|
| T |
11319460 |
gaactccgtgatcaaatctcgtgtgttctttgcttgtgtttttcgtatct |
11319509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 38726745 - 38726683
Alignment:
| Q |
28 |
gaactccataatcaaatctcgtgtgttctctgtttgtatttttcgtatctatttttcttttga |
90 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||| | |||||||||| ||||||| |||| |
|
|
| T |
38726745 |
gaactccatgatcaaatcttgtgtgttctctgtttgcgtgtttcgtatctgtttttctattga |
38726683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 13884854 - 13884800
Alignment:
| Q |
28 |
gaactccataatcaaatctcgtgtgttctctgtttgtatttttcgtatctatttt |
82 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||| ||||||| ||||||||| |
|
|
| T |
13884854 |
gaactccataatcaaatctcgtatgttctttgtttgcatttttcaaatctatttt |
13884800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 14024979 - 14024925
Alignment:
| Q |
28 |
gaactccataatcaaatctcgtgtgttctctgtttgtatttttcgtatctatttt |
82 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||| ||||||| ||||||||| |
|
|
| T |
14024979 |
gaactccataatcaaatctcgtatgttctttgtttgcatttttcaaatctatttt |
14024925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 28026983 - 28026911
Alignment:
| Q |
17 |
cacaattgaccgaactccataatcaaatctcgtgtgttctctgtttgtatttttcgtatctatttttcttttga |
90 |
Q |
| |
|
|||||||| |||||||||| ||||||| || |||||||||| ||||| |||||||||||| |||| ||||||| |
|
|
| T |
28026983 |
cacaattggccgaactccacgatcaaatatcttgtgttctctatttgtgtttttcgtatct-ttttacttttga |
28026911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 33717289 - 33717229
Alignment:
| Q |
17 |
cacaattgaccgaactccataatcaaatctcgtgtgttctctgtttgtatttttcgtatct |
77 |
Q |
| |
|
|||||||| ||| |||| | ||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
33717289 |
cacaattggtcgagctccttgatcaaatcttgtgtgttctctgtttgcatttttcgtatct |
33717229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 38213649 - 38213593
Alignment:
| Q |
14 |
agacacaattgaccgaactccataatcaaatctcgtgtgttctctgtttgtattttt |
70 |
Q |
| |
|
||||||||||| |||||| |||| ||||||||||| ||||| |||||||| |||||| |
|
|
| T |
38213649 |
agacacaattggccgaacgccatgatcaaatctcgagtgttttctgtttgcattttt |
38213593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University