View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8791_high_9 (Length: 240)
Name: NF8791_high_9
Description: NF8791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8791_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 44838715 - 44838499
Alignment:
| Q |
18 |
ttcttgttgcatatttggtttaccttttattacttaatttactcaatatataattatttgtggagcatcatcaagttggagttaggatgtgcttctactt |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44838715 |
ttcttgttgcatatttggtttactttttattacttaatttactcaatatataattatttgtggagcatcatcaagttggagttaggatgtgcttctgctt |
44838616 |
T |
|
| Q |
118 |
ggctgttttgttgaaaagtttttgctgttgcaacattgttatttatatttttgtagttcacggatggataagaataagataaaaatannnnnnngtcaca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44838615 |
ggctgttttgttgaaaagtttttgctgttgcaacattgttatttatatttttgtagttcacggatggataagaataagataaaaatatttttttgtcaca |
44838516 |
T |
|
| Q |
218 |
ttctcaatttcttctca |
234 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
44838515 |
ttctcaatttcttctca |
44838499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 44850368 - 44850249
Alignment:
| Q |
26 |
gcatatttggtttaccttttattacttaatttactcaa--tatataattatttgtggagcatcatcaagttggagttaggatgtgcttctacttggctgt |
123 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||| |||| ||||||||||||| || ||||||||||||||||||| || |||| ||||||||| |
|
|
| T |
44850368 |
gcatattaggtttactttttattacttaatttactctccgtataaaattatttgtgga-ca--atcaagttggagttaggatatggttctgcttggctgt |
44850272 |
T |
|
| Q |
124 |
tttgttgaaaagtttttgctgtt |
146 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
44850271 |
tttgttgaaaagtttttgctgtt |
44850249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 34129090 - 34128990
Alignment:
| Q |
20 |
cttgttgcatatttggtttaccttttattacttaatttactcaatatataattatttgtggagcatcatcaagttggagttaggatgtgcttctacttgg |
119 |
Q |
| |
|
|||| ||||||||| |||||| |||||||||| | |||||||| ||||||||||||||| | | ||||||||||| ||||||||| |||| | ||||| |
|
|
| T |
34129090 |
cttgatgcatattttgtttactttttattactgagtttactcagtatataattatttgt---gtaccatcaagttggggttaggatgcgcttgtgcttgg |
34128994 |
T |
|
| Q |
120 |
ctgt |
123 |
Q |
| |
|
|||| |
|
|
| T |
34128993 |
ctgt |
34128990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 34137682 - 34137582
Alignment:
| Q |
20 |
cttgttgcatatttggtttaccttttattacttaatttactcaatatataattatttgtggagcatcatcaagttggagttaggatgtgcttctacttgg |
119 |
Q |
| |
|
|||| ||||||||| |||||| |||||||||| | |||||||| ||||||||||||||| | | ||||||||||| ||||||||| |||| | ||||| |
|
|
| T |
34137682 |
cttgatgcatattttgtttactttttattactgagtttactcagtatataattatttgt---gtaccatcaagttggggttaggatgcgcttgtgcttgg |
34137586 |
T |
|
| Q |
120 |
ctgt |
123 |
Q |
| |
|
|||| |
|
|
| T |
34137585 |
ctgt |
34137582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University