View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8791_low_1 (Length: 635)
Name: NF8791_low_1
Description: NF8791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8791_low_1 |
 | |
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| [»] chr1 (2 HSPs) |
| |
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Alignment Details
Target: chr1 (Bit Score: 563; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 19 - 635
Target Start/End: Original strand, 48593064 - 48593676
Alignment:
| Q |
19 |
ccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtccaaaccttccttatatacatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48593064 |
ccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtccaaaccttccttatatacatg |
48593163 |
T |
|
| Q |
119 |
ctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatggtaacatgattccgaaagg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48593164 |
ctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatggtaacatgattctgaaagg |
48593263 |
T |
|
| Q |
219 |
ctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaaggtttttagaaaacaaagat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
48593264 |
ctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttaggccagaaaggtttttagaaaacaaagat |
48593363 |
T |
|
| Q |
319 |
attgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48593364 |
attgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaa |
48593463 |
T |
|
| Q |
419 |
ttggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctggatt |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48593464 |
ttggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaagatcttagatcaaggcaaaaaaattgatatggatgaacggcctggatt |
48593563 |
T |
|
| Q |
519 |
gactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaactttaataaaagggaatttgtgataaatta |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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|
| T |
48593564 |
gactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaactttagtaaaagggaatttgtgata----a |
48593659 |
T |
|
| Q |
619 |
agtagtgcaattgttgt |
635 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
48593660 |
agtagtgcaattgttgt |
48593676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 19 - 635
Target Start/End: Original strand, 48597675 - 48598287
Alignment:
| Q |
19 |
ccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtccaaaccttccttatatacatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48597675 |
ccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtccaaaccttccttatatacatg |
48597774 |
T |
|
| Q |
119 |
ctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatggtaacatgattccgaaagg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
48597775 |
ctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatggtaacatgattctgaaagg |
48597874 |
T |
|
| Q |
219 |
ctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaaggtttttagaaaacaaagat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
48597875 |
ctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttaggccagaaaggtttttagaaaacaaagat |
48597974 |
T |
|
| Q |
319 |
attgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48597975 |
attgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaa |
48598074 |
T |
|
| Q |
419 |
ttggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctggatt |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48598075 |
ttggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaagatcttagatcaaggcaaaaaaattgatatggatgaacggcctggatt |
48598174 |
T |
|
| Q |
519 |
gactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaactttaataaaagggaatttgtgataaatta |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
48598175 |
gactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaactttagtaaaagggaatttgtgata----a |
48598270 |
T |
|
| Q |
619 |
agtagtgcaattgttgt |
635 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
48598271 |
agtagtgcaattgttgt |
48598287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 611
Target Start/End: Complemental strand, 23231194 - 23230593
Alignment:
| Q |
19 |
ccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtccaaaccttccttatatacatg |
118 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| || | |||| ||||||||||| | ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23231194 |
ccaagggtgttgaaaaaagctcaagaggaggtagagagagttgtaggaaaggaaagattagtgtgtgaagaagacagtccaaaccttccttatatacatg |
23231095 |
T |
|
| Q |
119 |
ctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatggtaacatgattccgaaagg |
218 |
Q |
| |
|
| |||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| |||| ||||| |
|
|
| T |
23231094 |
ccatcataaaagaaaccatgaggcttcaccctccgataccgatgattatgaggaaaggaatggaagattgtgttgttgatggtaaaatggttccaaaagg |
23230995 |
T |
|
| Q |
219 |
ctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaaggtttttagaaaacaaag-- |
316 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| |||| ||||||||||||||| ||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
23230994 |
atcaatggtttgtgtgaacatttgggctatgggaagagaccaaaagatatgggaaaatgcattagattttaagccagaaaggtttttagaaaacaaagaa |
23230895 |
T |
|
| Q |
317 |
-------atattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattac |
409 |
Q |
| |
|
|||| || ||||||||||| || | ||||||| | ||||||||||||||||||||||| || ||||||||||| |||||| | || ||||| | |
|
|
| T |
23230894 |
ggaaacaatatagatatgaaagggcatcactatgagttgctaccatttggttctggaaggagaggctgccctggtatgccgttggccatgcgccaattgc |
23230795 |
T |
|
| Q |
410 |
ccactgtaattggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacg |
509 |
Q |
| |
|
|||| ||| | || |||||||| ||||||||||||||||| |||||||| || ||| |||| || ||||||| |||| | |||||||||||| | |
|
|
| T |
23230794 |
ccaccgtagtcggggctttggtgcaatgctttgagtggaaaatgcttgactccgaaggtaaaatattagatcgaggcaaaacaatcgatatggatgaaag |
23230695 |
T |
|
| Q |
510 |
gcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaactttaataaaagggaatttgt |
609 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||| || ||||| ||||||| ||| |||||||| |||| ||||||||||||||| |
|
|
| T |
23230694 |
acctggattgaccgctcctagagccaatgatcttatttgtattccgatttcaagaatgaacccaaatacttttcttcagcttttgtaaaagggaatttgt |
23230595 |
T |
|
| Q |
610 |
ga |
611 |
Q |
| |
|
|| |
|
|
| T |
23230594 |
ga |
23230593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 67 - 569
Target Start/End: Complemental strand, 23223401 - 23222890
Alignment:
| Q |
67 |
aaggaaagacttgtgtgtgaagaagacggtccaaaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgatta |
166 |
Q |
| |
|
||||||||||| || ||||||| |||| ||||||||||||||||||||| || || |||||||||||| |||||||||| || || ||||||||||| |
|
|
| T |
23223401 |
aaggaaagactagtatgtgaagcagacattccaaaccttccttatatacaagccattataaaagaaacattgaggcttcacccaccactaccgatgattg |
23223302 |
T |
|
| Q |
167 |
tgaggaagggaatggaagattgtgtggttgatggtaacatgattccgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagat |
266 |
Q |
| |
|
||||| |||| ||||||||||||| ||||| || ||||| ||||||||||| |||||||| |||||||||||||| | ||||||| |||||| |
|
|
| T |
23223301 |
ctaggaaaggaacaaaagattgtgtggtcgatgggaaaatgatcaaaaaaggctcaatagtttgtgtgaacatttgggctattggaagggactcaaagac |
23223202 |
T |
|
| Q |
267 |
atgggaaaacccattagagtttagaccagaaaggtttttagaa-----aacaaa----gatattgacatgaaagggcaccagtttgagttgttgccattt |
357 |
Q |
| |
|
||| |||||||| |||||||||| || ||||||||||||||| || | | || || || || |||||||| | |||||||||||||||||| |
|
|
| T |
23223201 |
ttggaaaaacccactagagtttaggcctgaaaggtttttagaatctggaaaagagagtgagatagatatcaaagggcatgactttgagttgttgccattt |
23223102 |
T |
|
| Q |
358 |
ggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaagatgcttg |
457 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||| | || |||| || ||||| ||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
23223101 |
ggttctggaaggagaggttgcccggggatgcctttggccatgcgcgaattgccgactgtgattggagctttagtacaatgctttgagtggaagatgcttg |
23223002 |
T |
|
| Q |
458 |
attcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattccagt |
557 |
Q |
| |
|
| || ||| |||| | |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |
|
|
| T |
23223001 |
actctgaaggtaaattattagatcaaggcaaaacaatcgatatggatgaacggcctggattgactgctcctagagccaatgatcttttttgcattccagt |
23222902 |
T |
|
| Q |
558 |
tgcaagattgaa |
569 |
Q |
| |
|
|||||||||||| |
|
|
| T |
23222901 |
tgcaagattgaa |
23222890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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