View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8791_low_13 (Length: 253)
Name: NF8791_low_13
Description: NF8791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8791_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 40942522 - 40942295
Alignment:
| Q |
10 |
taaactgcactaagaggatcaaagtatgctatcctttgctgtggttttttgggtgtcaaggttgcaagactattttaaagggaggtgatgggtgatgaat |
109 |
Q |
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| T |
40942522 |
taaactgcactaagaggatcaaagtatgatatcctttgctgtggttttttgggtgtcaagattgcaagactattttaaagggaggtgatgggtgatgaat |
40942423 |
T |
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| Q |
110 |
ttcctaaacgataaaagtatagctacaatgtgaaaaaggtagaagtatgaataaaaatgttatattgaatatgaacatgacagatgcccataagttttgg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40942422 |
ttcctaaacgataaaagtatagctacaatgtgaaaaaggtagaagtatgaataaaaatgttatattgaatatgaacatgacagatgcccataagttttgg |
40942323 |
T |
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| Q |
210 |
aatgttcatgcaacatagaccaaaatag |
237 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
40942322 |
aatgttcatgcaacatagaccaaaatag |
40942295 |
T |
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