View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8791_low_14 (Length: 249)
Name: NF8791_low_14
Description: NF8791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8791_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 34865680 - 34865436
Alignment:
| Q |
1 |
attttcatggtgtattcaatgttacgcaaaaatatctcacggattccttatatataaatataaattattataaaagaaaagaacgggcagagtggcagca |
100 |
Q |
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| T |
34865680 |
attttcatggtgtattcaatgttacgcaaaaatatctcatggattccttatatataaatataaattattataaaagaaaagaacgggcagagtggcagca |
34865581 |
T |
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| Q |
101 |
gggactggtgacggagacttgaagaaaaagtgtgtgatgatggatgatgacgcagttgactggctaaatcttcctcgagaattatggttagttattatat |
200 |
Q |
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| T |
34865580 |
gggactggtgacggagacttgaagaaaaagtgtgtgatgatggatgatgacgcagttgactggctaaatcttcctcgagaattatggttagttattatat |
34865481 |
T |
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| Q |
201 |
ccatgaatttgaatccatttgatgttcttcgattccgtagtgtct |
245 |
Q |
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| T |
34865480 |
ccaagaatttgaatccatttgatgttcttcgattccgtagtgtct |
34865436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 51857877 - 51858077
Alignment:
| Q |
1 |
attttcatggtgtattcaatgttacgcaaaaa-tatctcacggattccttatatataaatataaattattataaaa--gaaaagaacgggcagagtggca |
97 |
Q |
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| T |
51857877 |
attttcatggtgtattcaatgttatgcaaaaaatatctcgtggattcttcata----aatataaattatcaaaaaaaagaaaagaatgggcagagtagca |
51857972 |
T |
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| Q |
98 |
gcagggactggtgacggagacttgaagaaaaagtgtgtgatgatggatgatgacgcagttgactggctaaatcttcctcgagaattatggttagttatta |
197 |
Q |
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| T |
51857973 |
gcaggaacagatg-cggagacttgaagaaagtgtgtgtgatgatagatgatgacacggttgattggctaaatcttcctcgagacttatggttagttatta |
51858071 |
T |
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| Q |
198 |
tatcca |
203 |
Q |
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|||||| |
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| T |
51858072 |
tatcca |
51858077 |
T |
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