View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8791_low_19 (Length: 201)
Name: NF8791_low_19
Description: NF8791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8791_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 8e-94; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 5445703 - 5445876
Alignment:
| Q |
11 |
gtgagaagaatgtgcttgtgtttgatcttggtggtggaacattcgatgtttccttagtgaccattgatgaaggaatgttccaggttaaggccacattggg |
110 |
Q |
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| T |
5445703 |
gtgagaagaatgtgcttgtgtttgatcttggtggtggaacattcgatgtttccttagtgaccattgatgaaggaatgttccaggttaaggccacattggg |
5445802 |
T |
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| Q |
111 |
agatactcatttgggtggtattgatttcgataacaatttggtgaaccgtcttgttgaattatttcatagaaagt |
184 |
Q |
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| T |
5445803 |
agatactcatttgggtggtattgatttcgataacaatttggtgaaccgtcttgttgaattatttcatagaaagt |
5445876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 93 - 184
Target Start/End: Complemental strand, 5433497 - 5433406
Alignment:
| Q |
93 |
ggttaaggccacattgggagatactcatttgggtggtattgatttcgataacaatttggtgaaccgtcttgttgaattatttcatagaaagt |
184 |
Q |
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| T |
5433497 |
ggttaaagcctcattgagagatactcatttaagtggtgttgactttgataacaatttggtgaaccgtcttgttgaattgtttcatagaaagt |
5433406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 184
Target Start/End: Complemental strand, 5440959 - 5440798
Alignment:
| Q |
28 |
gtgtttgatcttggtggtggaacattcgatgtttccttagtg-accattgatgaaggaatgttccaggttaaggccacattgggagatac--tcat--tt |
122 |
Q |
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| T |
5440959 |
gtgttcgaccttggtggtggaacttttgatgtttccttagtccatcattgacgaaggaatattcaaagttaaagcaacattgagacatacgttaatgttt |
5440860 |
T |
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| Q |
123 |
gggtggtattgatttcgataacaatttggtgaaccgtcttgttgaattatttcatagaaagt |
184 |
Q |
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| T |
5440859 |
gggtgatgttgagtttgataacaatttggtgaaccttcttgttgaattattttatagaaagt |
5440798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 5432565 - 5432507
Alignment:
| Q |
112 |
gatactcatttgggtggtattgatttcgataacaatttggtgaaccgtcttgttgaatt |
170 |
Q |
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| T |
5432565 |
gatactcatttgggtgctttcaattttgataacaatttggtgaactgtcttgttgaatt |
5432507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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