View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8791_low_2 (Length: 624)
Name: NF8791_low_2
Description: NF8791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8791_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Complemental strand, 27710559 - 27710124
Alignment:
| Q |
18 |
actccatggcttcacttggagtgcacatcccaatatatcaagaatcaatcattttgattccaatggcgttatatctcttgatgagccactgacagttgca |
117 |
Q |
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| T |
27710559 |
actccatggcttcacttggagtgcacatcccaatatatcaagaatcaatcattttgattccaatggcgttatatctcttgatgagccactgacagttgca |
27710460 |
T |
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| Q |
118 |
gcaaagccacgattagcagcagaattgtatgaattttgaaataagggaaaataagaagctaaggcctatcaaatccacatgtttatcttcattttgcagt |
217 |
Q |
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| T |
27710459 |
gcaaagccacgattagcagcagaattgtatgaattttgaagtaagggaaaataagaagctaaggcctatcaaatccacatgtttatcttcattttgcagt |
27710360 |
T |
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| Q |
218 |
tatgttatgtaattaggtacaaattaaataagttggatatttggtttgaaaccatgttgttttttgtatatagaagctttgaagctttaaaggcatgaag |
317 |
Q |
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| T |
27710359 |
tatgttatgtaattagatacaaattaaataagttggatatttggtttgaaaccatgttgttttttgtatatagaagctttgaagctttaaaggcatgaag |
27710260 |
T |
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| Q |
318 |
tgcgaaaaagagaaactgtactaatatagatagatttgagactcaacgttgctaataagaagttaacatttgagagcggatgcgttgactgtttgggcat |
417 |
Q |
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| T |
27710259 |
tgtgaaaaagagaaactgtactaatatagatagatttgagac-caacgttgctaataagaagttaacatttgagagcggatgcgttgactgtttgggcat |
27710161 |
T |
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| Q |
418 |
aatttttcttgtacgtgatgacacaaagcgaagacca |
454 |
Q |
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| T |
27710160 |
aatttttcttgtacgtgaagacacaaagcgaagacca |
27710124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 27699900 - 27700113
Alignment:
| Q |
22 |
catggcttcacttggagtgcacatcccaatatatcaagaatcaatcattttgattccaatggcgttatatctcttgatgagccactgacagttgcagcaa |
121 |
Q |
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| T |
27699900 |
catggcttcacttggtgtttacctcccaatacaacaagaataaagtttgttgagtccaacggtgttatggttcttgatgagccattaacggttgtagcaa |
27699999 |
T |
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| Q |
122 |
agccacgattagcagcagaattgtatgaattttgaaataagggaaaataagaagctaaggcctatcaaatccacatgtttatcttcattttgcagttatg |
221 |
Q |
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| T |
27700000 |
agccacgattagcagcagaattgtatggcttttgaagtatgggaaaataagattctaaggcttaacaaattcacatgtttatcttcattttacagttatg |
27700099 |
T |
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| Q |
222 |
ttatgtaattaggt |
235 |
Q |
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| T |
27700100 |
ttatgtaattaggt |
27700113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 508 - 611
Target Start/End: Complemental strand, 27708802 - 27708699
Alignment:
| Q |
508 |
gttgtagtgtttgtttcggcttcttgtgtggtttatggctacttgtttgtttttcctatgtacgacaccctttgtctttgtatttttgtattggcatgtg |
607 |
Q |
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| T |
27708802 |
gttgtagtgtttgtttcggcttcttgtgtggtttatggctacttttttgttttgcctatgtacgacaccctttgtctttgtatttttgtattggcttgcg |
27708703 |
T |
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| Q |
608 |
atgt |
611 |
Q |
| |
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|||| |
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| T |
27708702 |
atgt |
27708699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 27700111 - 27700168
Alignment:
| Q |
260 |
ggtttgaaaccatgttgttttttgtatatagaagctttgaagctttaaaggcatgaag |
317 |
Q |
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|||||||| | |||||| |||||||||||||||||||||| |||||||||||| |||| |
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| T |
27700111 |
ggtttgaatctatgttggtttttgtatatagaagctttgatgctttaaaggcacgaag |
27700168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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