View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8791_low_3 (Length: 606)

Name: NF8791_low_3
Description: NF8791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8791_low_3
NF8791_low_3
[»] chr2 (4 HSPs)
chr2 (95-591)||(25550894-25551386)
chr2 (1-56)||(25551403-25551458)
chr2 (224-269)||(35685464-35685509)
chr2 (229-270)||(41284593-41284634)
[»] chr4 (3 HSPs)
chr4 (491-571)||(48512503-48512578)
chr4 (221-270)||(26683635-26683684)
chr4 (189-269)||(48520053-48520128)
[»] chr8 (2 HSPs)
chr8 (224-270)||(42350453-42350499)
chr8 (223-271)||(34187011-34187059)
[»] chr7 (1 HSPs)
chr7 (224-269)||(5000403-5000448)
[»] chr5 (2 HSPs)
chr5 (239-270)||(18730401-18730432)
chr5 (224-269)||(6662124-6662169)


Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 95 - 591
Target Start/End: Complemental strand, 25551386 - 25550894
Alignment:
Q  95 caaagtatgtttgtcactagaaaaacgatcatctcgtgaatattaaggagaatacaaataaatgcccttaatttattttatgttgggatttgcatattca 194  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25551386 caaagtatgtttgtcactagaaaaacgatcatctcctgaatactaaggagaatacaaataagtgcccttaatttattttatgttgggatttgcatattca 25551287  T
Q  195 acatattaaaacatacaaaacaaactatattttttacatcaaaattataaattatttccatttttaaatccttaacatttaacaaagttcccttagtaag 294  Q
    ||||||||||| ||| ||||  ||||||  |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25551286 acatattaaaatataaaaaatgaactat--tttttacatcaaaattatcaattatttccatttttaaatc-ttaacatttaacaaagttcccttagtaag 25551190  T
Q  295 acccatatactaatcacgtatgtctttnnnnnnnnnngcaaggaccattaaatatatattgtttgctgagtatacaatgcgtcagataccatacacacta 394  Q
    ||||||||||||||||||||||||||           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25551189 acccatatactaatcacgtatgtctt-aaaaaaaaaagcaaggaccattaaatatatattgtctgctgagtatacaatgcgtcagataccatacacacta 25551091  T
Q  395 tttttcgatgaataactctactctagtatgttgacataatgtgaaacacgaatttagtattggtacaaaagtagttttgaacatttggaaacacaccaga 494  Q
    ||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25551090 tttttcgatgaataattactctctagtatgttgacataatgtgaaacacgaatttagtattggtacaaaagtagttttgaacatttggaaacacaccaga 25550991  T
Q  495 aggattctagaatgtattggcatcaaggattaaacatcatatggttgattaactatttgttgacacaagtgaaacacatatagtaagccttgatagt 591  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25550990 aggattctagaatgtattggcatcaatgattaaacatcatatggttgattaactatttgttgacacaagtgaaacacaaatagtaagccttgatagt 25550894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 25551458 - 25551403
Alignment:
Q  1 taaaagtgtctaatgcctcatatatgataacattaaagtaggacacaaacactacc 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25551458 taaaagtgtctaatgcctcatatatgataacattaaagtaggacacaaacactacc 25551403  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 35685509 - 35685464
Alignment:
Q  224 ttttttacatcaaaattataaattatttccatttttaaatccttaa 269  Q
    |||||||||| ||| ||||||||||||| ||| |||||||||||||    
T  35685509 ttttttacataaaacttataaattattttcatatttaaatccttaa 35685464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 41284634 - 41284593
Alignment:
Q  229 tacatcaaaattataaattatttccatttttaaatccttaac 270  Q
    ||||| ||| |||||||||||||| |||||||||||||||||    
T  41284634 tacataaaatttataaattatttctatttttaaatccttaac 41284593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 491 - 571
Target Start/End: Original strand, 48512503 - 48512578
Alignment:
Q  491 cagaaggattctagaatgtattggcatcaaggattaaacatcatatggttgattaactatttgttgacacaagtgaaacac 571  Q
    |||| |||||||||||||| |||| ||||||||||||||||||||     ||||||| |||||||||||||||||||||||    
T  48512503 cagatggattctagaatgtcttggtatcaaggattaaacatcata-----gattaaccatttgttgacacaagtgaaacac 48512578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 26683684 - 26683635
Alignment:
Q  221 atattttttacatcaaaattataaattatttccatttttaaatccttaac 270  Q
    ||||||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  26683684 atattttctacataaaatttataaattatttccatttttaaatccttaac 26683635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 269
Target Start/End: Complemental strand, 48520128 - 48520053
Alignment:
Q  189 tattcaacatattaaaacatacaaaacaaactatattttttacatcaaaattataaattatttccatttttaaatccttaa 269  Q
    ||||||||| ||||||||||| |||||||     ||||||||||| || ||||| |||||||| |||||||||||||||||    
T  48520128 tattcaacaaattaaaacataaaaaacaac----attttttacat-aagattattaattattttcatttttaaatccttaa 48520053  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 42350453 - 42350499
Alignment:
Q  224 ttttttacatcaaaattataaattatttccatttttaaatccttaac 270  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  42350453 ttttctacataaaatttataaattatttccatttttaaatccttaac 42350499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 34187011 - 34187059
Alignment:
Q  223 attttttacatcaaaattataaattatttccatttttaaatccttaaca 271  Q
    ||||||||||| |||||||| |||| |||||||||||||||| ||||||    
T  34187011 attttttacatgaaaattatcaattgtttccatttttaaatctttaaca 34187059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 5000403 - 5000448
Alignment:
Q  224 ttttttacatcaaaattataaattatttccatttttaaatccttaa 269  Q
    |||||||||| ||| |||||||||||||| ||||||||||||||||    
T  5000403 ttttttacataaaacttataaattatttctatttttaaatccttaa 5000448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 270
Target Start/End: Original strand, 18730401 - 18730432
Alignment:
Q  239 ttataaattatttccatttttaaatccttaac 270  Q
    ||||||||||||||||||||||||||||||||    
T  18730401 ttataaattatttccatttttaaatccttaac 18730432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 6662124 - 6662169
Alignment:
Q  224 ttttttacatcaaaattataaattatttccatttttaaatccttaa 269  Q
    |||| ||||||||| |||||||||||||| |||||| |||||||||    
T  6662124 ttttctacatcaaatttataaattatttcaatttttgaatccttaa 6662169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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