View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8791_low_5 (Length: 431)
Name: NF8791_low_5
Description: NF8791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8791_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 16 - 366
Target Start/End: Original strand, 32855978 - 32856328
Alignment:
| Q |
16 |
aaaacaaaaccctttgaactaagataatatctccagctggaagnnnnnnnnnnnnnnnntatcttcaaagcactgtaactgttctgcactctgtggctac |
115 |
Q |
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| T |
32855978 |
aaaacaaaaccctttgaactaagataatatctccagctggaagaaaaacaaaaagaaaatatcttcaaagcactgtaactgttctgcactctgtggctac |
32856077 |
T |
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| Q |
116 |
taccatcacccaataaatcatctctctttggaaagaaatcacactttaatttctgcacaatttatgtagaaacagatacactttttaatctatttctaat |
215 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32856078 |
taccgtcacccaataaatcatctctctttggaaagaaatcacactttaatttctgcacaatttatgtagaaacagatacactttttaatctatttctaat |
32856177 |
T |
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| Q |
216 |
ctaacattttccccaaattagaaaccacggatgagagagggttggatagctcttgctttgagttaagagagaaagagttgggggttctgggttcgaacgt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32856178 |
ctaacattttccccaaattagaaaccacggatgagagagggttggatagctcttgctttgagttaagagagaaagagttgggggttctgggttcgaacgt |
32856277 |
T |
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| Q |
316 |
ggacaaagaaatagatctaaatttaacaactaattactaacctttgtcatt |
366 |
Q |
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| T |
32856278 |
ggacagagaaatagatctaaatttaacaactaattactaacctttgtcatt |
32856328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 32850583 - 32850625
Alignment:
| Q |
16 |
aaaacaaaaccctttgaactaagataatatctccagctggaag |
58 |
Q |
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| T |
32850583 |
aaaacaaaaccctttgaactaagataatatctccagctggaag |
32850625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 214
Target Start/End: Original strand, 32850670 - 32850766
Alignment:
| Q |
113 |
tactaccatcacccaataaatcatctctctttggaaagaaatcacactttaatttctgcacaatttatgtagaaacagatacactttttaatctatttct |
212 |
Q |
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||||||| ||||| | |||||||||| |||||| || | |||||||||| |||||||||||||| |||||||| |||||||||| |||||||||| |
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| T |
32850670 |
tactaccgtcacctagtaaatcatctatctttgcaaggtaatcacacttc-----ctgcacaatttatgcagaaacagctacactttttcatctatttct |
32850764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 32853140 - 32853172
Alignment:
| Q |
15 |
aaaaacaaaaccctttgaactaagataatatct |
47 |
Q |
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| T |
32853140 |
aaaaagaaaaccctttgaactaagataatatct |
32853172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 367
Target Start/End: Complemental strand, 10223426 - 10223394
Alignment:
| Q |
335 |
aatttaacaactaattactaacctttgtcatta |
367 |
Q |
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| T |
10223426 |
aatttaacaactaattactaacatttgtcatta |
10223394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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