View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8791_low_7 (Length: 341)
Name: NF8791_low_7
Description: NF8791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8791_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 8171967 - 8172280
Alignment:
| Q |
11 |
gtgagatgaataatgcaagagaagtacttttagcagcatttaaaggtgccaacaaaaatggagcacttgtggttggttataatgttaggcatagggcatt |
110 |
Q |
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| T |
8171967 |
gtgacatgaataatgcaagagaagtttttctagcagcatttaaaggtgccaataaagatggagcacttgtggttggttataatgttaggcatagggcatt |
8172066 |
T |
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| Q |
111 |
gagatggagacaatttagggcaacatatttacctataggagaagggttgcttgtgaccaaaattgatcttaatgtgaagaaagattatgatatggttgtc |
210 |
Q |
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| T |
8172067 |
gagatggagacaatttagggcaacatatttacctataggagaagggttgcttgtgaccaaaattgatcttaatgtgaagaaagattatgatatggttgtc |
8172166 |
T |
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| Q |
211 |
caaaggaataagagtaattggattgttcaagtagataattgcaccggagaggaacatatttttagggtcacctctcctaataagaaaatacatgtcgagg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8172167 |
caaaggaataagagtaattggattgttcaagtagataattgcaccggagaggaacatatttttagggtcacctctcctaataagaaaatacatgtcgagg |
8172266 |
T |
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| Q |
311 |
tttaagtcgtaaat |
324 |
Q |
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|||||||||||||| |
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| T |
8172267 |
tttaagtcgtaaat |
8172280 |
T |
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