View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8791_low_9 (Length: 316)

Name: NF8791_low_9
Description: NF8791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8791_low_9
NF8791_low_9
[»] chr6 (2 HSPs)
chr6 (14-300)||(33965703-33965990)
chr6 (14-70)||(1664186-1664242)
[»] chr8 (3 HSPs)
chr8 (136-225)||(43077255-43077344)
chr8 (256-300)||(43077381-43077425)
chr8 (28-77)||(11319460-11319509)
[»] chr5 (1 HSPs)
chr5 (28-90)||(38726683-38726745)
[»] chr2 (2 HSPs)
chr2 (28-82)||(13884800-13884854)
chr2 (28-82)||(14024925-14024979)
[»] chr1 (2 HSPs)
chr1 (17-90)||(28026911-28026983)
chr1 (17-77)||(33717229-33717289)
[»] chr4 (1 HSPs)
chr4 (14-70)||(38213593-38213649)


Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 33965990 - 33965703
Alignment:
Q  14 agacacaattgaccgaactccataatcaaatctcgtgtgttctctgtttgtatttttcgtatctatttttcttttgagccaaggtttctcttctaatagt 113  Q
    |||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||| |||||||||| |||||||||||||||||||||||||    
T  33965990 agacacaattgaccgaactccacaatcaaatcttgtgtgttctttgtttgtatttttcatatcgatttttctttcgagccaaggtttctcttctaatagt 33965891  T
Q  114 ttgtgtgtgtttt-gtgtttagggagaaagttaacattcctcctttaaaatccttcataaccatagaaggagatggtgcagatacaacaattgttcaatg 212  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33965890 ttgtgtgtgtttttgtgtctagggagaaagttaacattcctcctttaaaatccttcataaccatagaaggagatggtgcagatacaacaattgttcaatg 33965791  T
Q  213 gggtgacactgctgcaacacctggtccaagagggaatccattgggaacatatggttcagcaacttttgcagttaattcaccttatttc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33965790 gggtgacactgctgcaacacctggtccaagagggaatccattgggaacatatggttcagcaacttttgcagttaattcaccttatttc 33965703  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 1664242 - 1664186
Alignment:
Q  14 agacacaattgaccgaactccataatcaaatctcgtgtgttctctgtttgtattttt 70  Q
    ||||||||||| ||||||||||| |||||||||| ||| ||||||| ||||||||||    
T  1664242 agacacaattggccgaactccatgatcaaatctcttgtattctctgattgtattttt 1664186  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 43077255 - 43077344
Alignment:
Q  136 gagaaagttaacattcctcctttaaaatccttcataaccatagaaggagatggtgcagatacaacaattgttcaatggggtgacactgct 225  Q
    |||||||||| ||||||| | |||||||| |||||||||||| ||||||  |||||||||| ||||||||||||||||||||||||||||    
T  43077255 gagaaagttagcattcctgcattaaaatcattcataaccatacaaggagcaggtgcagataaaacaattgttcaatggggtgacactgct 43077344  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 43077381 - 43077425
Alignment:
Q  256 ggaacatatggttcagcaacttttgcagttaattcaccttatttc 300  Q
    ||||| |||||||| |||||||||||||| |||||||||||||||    
T  43077381 ggaacttatggttcggcaacttttgcagtgaattcaccttatttc 43077425  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 11319460 - 11319509
Alignment:
Q  28 gaactccataatcaaatctcgtgtgttctctgtttgtatttttcgtatct 77  Q
    ||||||| | ||||||||||||||||||| || |||| ||||||||||||    
T  11319460 gaactccgtgatcaaatctcgtgtgttctttgcttgtgtttttcgtatct 11319509  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 38726745 - 38726683
Alignment:
Q  28 gaactccataatcaaatctcgtgtgttctctgtttgtatttttcgtatctatttttcttttga 90  Q
    ||||||||| ||||||||| ||||||||||||||||  | |||||||||| ||||||| ||||    
T  38726745 gaactccatgatcaaatcttgtgtgttctctgtttgcgtgtttcgtatctgtttttctattga 38726683  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 13884854 - 13884800
Alignment:
Q  28 gaactccataatcaaatctcgtgtgttctctgtttgtatttttcgtatctatttt 82  Q
    |||||||||||||||||||||| |||||| |||||| |||||||  |||||||||    
T  13884854 gaactccataatcaaatctcgtatgttctttgtttgcatttttcaaatctatttt 13884800  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 14024979 - 14024925
Alignment:
Q  28 gaactccataatcaaatctcgtgtgttctctgtttgtatttttcgtatctatttt 82  Q
    |||||||||||||||||||||| |||||| |||||| |||||||  |||||||||    
T  14024979 gaactccataatcaaatctcgtatgttctttgtttgcatttttcaaatctatttt 14024925  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 28026983 - 28026911
Alignment:
Q  17 cacaattgaccgaactccataatcaaatctcgtgtgttctctgtttgtatttttcgtatctatttttcttttga 90  Q
    |||||||| ||||||||||  ||||||| || |||||||||| ||||| |||||||||||| |||| |||||||    
T  28026983 cacaattggccgaactccacgatcaaatatcttgtgttctctatttgtgtttttcgtatct-ttttacttttga 28026911  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 33717289 - 33717229
Alignment:
Q  17 cacaattgaccgaactccataatcaaatctcgtgtgttctctgtttgtatttttcgtatct 77  Q
    ||||||||  ||| |||| | ||||||||| |||||||||||||||| |||||||||||||    
T  33717289 cacaattggtcgagctccttgatcaaatcttgtgtgttctctgtttgcatttttcgtatct 33717229  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 38213649 - 38213593
Alignment:
Q  14 agacacaattgaccgaactccataatcaaatctcgtgtgttctctgtttgtattttt 70  Q
    ||||||||||| |||||| |||| ||||||||||| ||||| |||||||| ||||||    
T  38213649 agacacaattggccgaacgccatgatcaaatctcgagtgttttctgtttgcattttt 38213593  T

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