View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8792_high_12 (Length: 255)

Name: NF8792_high_12
Description: NF8792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8792_high_12
NF8792_high_12
[»] chr1 (1 HSPs)
chr1 (1-236)||(1717845-1718080)
[»] chr3 (16 HSPs)
chr3 (1-227)||(19990150-19990376)
chr3 (7-177)||(19832501-19832671)
chr3 (1-171)||(26647629-26647799)
chr3 (1-177)||(19819185-19819361)
chr3 (1-164)||(19956709-19956872)
chr3 (1-165)||(19839018-19839182)
chr3 (1-177)||(20015518-20015694)
chr3 (1-171)||(20033657-20033827)
chr3 (1-177)||(26653773-26653949)
chr3 (1-172)||(19812908-19813079)
chr3 (1-98)||(19951749-19951846)
chr3 (1-203)||(19849621-19849823)
chr3 (1-177)||(20035920-20036096)
chr3 (1-165)||(24839303-24839467)
chr3 (65-171)||(20046809-20046915)
chr3 (22-73)||(20007693-20007744)
[»] chr8 (3 HSPs)
chr8 (1-177)||(22655633-22655809)
chr8 (1-98)||(11544695-11544792)
chr8 (10-98)||(11563819-11563907)
[»] chr5 (3 HSPs)
chr5 (1-177)||(9815659-9815835)
chr5 (1-171)||(26354250-26354420)
chr5 (4-171)||(38434912-38435079)
[»] chr2 (1 HSPs)
chr2 (1-97)||(39191373-39191469)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 1717845 - 1718080
Alignment:
Q  1 tgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgatnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  1717845 tgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgataa 1717944  T
Q  101 nnnnntgtattttccatcgagattgtttgagggaaatgttacctcacgttatgcaaggtggtggaagcaattggtatctggcagcaacgattttgttaag 200  Q
         ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717945 aaaaatgtattttccatcgagattttttgagggaaatgttacctcacgttatgcaaggtggtggaagcaattggtatctggcagcaacgattttgttaag 1718044  T
Q  201 aaaagtgcgcagcagaagagacgtgcatgttcaacg 236  Q
    ||||||| ||||||||||||| ||||||||||||||    
T  1718045 aaaagtgtgcagcagaagagatgtgcatgttcaacg 1718080  T

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Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 19990150 - 19990376
Alignment:
Q  1 tgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgatnn 100  Q
    ||||||||||||||||||||||| |||||||| | |||||||| ||||||||| || ||||  |||||||| || |||||  ||||||||||||||||      
T  19990150 tgcaatttggaatggatcaagatattccaagttacgtgcctaggttcaatgagactgaatctgttgcttgggaaaactacaacaggcccatatctgatga 19990249  T
Q  101 nnnnntgtattttccatcgagattgtttgagggaaatgttacctcacgttatgcaaggtggtggaagcaattggtatctggcagcaacgattttgttaag 200  Q
         |||||||||||||||| |||||||||| | |||||||| | |||||||||  |||||||||| |||| ||| ||    ||||| |||||||||||    
T  19990250 acatgtgtattttccatcgaggttgtttgaggcagatgttaccactcgttatgcagagtggtggaagaaatttgtacctaattgcaacaattttgttaag 19990349  T
Q  201 aaaagtgcgcagcagaagagacgtgca 227  Q
    |||| || ||||||||||||| |||||    
T  19990350 aaaactgtgcagcagaagagaagtgca 19990376  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 19832501 - 19832671
Alignment:
Q  7 ttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgatnnnnnnnt 106  Q
    ||||||| ||||||||||||||  || ||||| |||| ||||||||| |||||| ||||||||||||| ||||||||||||| |||||||||       |    
T  19832501 ttggaattgatcaagatgttcctggttatgtggctaggttcaatgagactaaatacattgcttggaaaaactactgcaggccaatatctgataaaaactt 19832600  T
Q  107 gtattttccatcgagattgtttgagggaaatgttacctcacgttatgcaaggtggtggaagcaattggtat 177  Q
    |||||||||| | ||||| ||||||| | |||||||| |||||||||||||||||||||||||| ||||||    
T  19832601 gtattttccaccaagattatttgaggcagatgttaccacacgttatgcaaggtggtggaagcaactggtat 19832671  T

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Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 26647629 - 26647799
Alignment:
Q  1 tgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgatnn 100  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||  ||||||||||||| ||||||| || | ||||||||||      
T  26647629 tgcaatttggaatggatcaagatgttccgagtgatgtgcctcgattcaatgagactaaagacattgcttggaaaaactactgtagacgcatatctgatag 26647728  T
Q  101 nnnnntgtattttccatcgagattgtttgagggaaatgttacctcacgttatgcaaggtggtggaagcaat 171  Q
         ||||||| ||||||||||| ||||||| | |||||||  | |||||||||||||||||||| ||||    
T  26647729 gagtttgtatttcccatcgagattttttgaggcagatgttactacccgttatgcaaggtggtggaaacaat 26647799  T

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Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 19819185 - 19819361
Alignment:
Q  1 tgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgatnn 100  Q
    |||| |||||||| ||||||||||||||  || ||||| |||| ||||||||| |||||| ||||||||||||| ||||||||||||| |||||||||      
T  19819185 tgcagtttggaattgatcaagatgttcctggttatgtggctaggttcaatgagactaaatacattgcttggaaaaactactgcaggccaatatctgataa 19819284  T
Q  101 nnnnntgtattttccatcgagattgtttgagggaaatgttacctcacgttatgcaaggtggtggaagcaattggtat 177  Q
         ||||||||||| | ||||| ||||||| | |||||||| |||||||||||||||||||||| ||| ||||||    
T  19819285 aaacttgtattttccaccaagattatttgaggcagatgttaccacacgttatgcaaggtggtggaaacaactggtat 19819361  T

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Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 19956709 - 19956872
Alignment:
Q  1 tgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgatnn 100  Q
    ||||||||||||| ||||||||||||||  || ||||  |||| ||||||||| |||||| ||||||||||||| |||||||||| ||||||| ||||      
T  19956709 tgcaatttggaattgatcaagatgttccgggttatgtagctaggttcaatgagactaaatacattgcttggaaaaactactgcagacccatatatgataa 19956808  T
Q  101 nnnnntgtattttccatcgagattgtttgagggaaatgttacctcacgttatgcaaggtggtgg 164  Q
         ||||||||||| | ||||| ||||||| | |||||||| ||||||||||||||||||||    
T  19956809 aaacttgtattttccaccaagattatttgaggcagatgttaccacacgttatgcaaggtggtgg 19956872  T

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Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 19839018 - 19839182
Alignment:
Q  1 tgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgatnn 100  Q
    ||||||| ||||||||||||||||||||| || ||||| |||| ||||||| | |||||| ||||||||||||| |||| ||||| ||||||| ||||      
T  19839018 tgcaattcggaatggatcaagatgttccaggttatgtggctaggttcaatgtgactaaatacattgcttggaaaaactattgcagacccatatatgataa 19839117  T
Q  101 nnnnntgtattttccatcgagattgtttgagggaaatgttacctcacgttatgcaaggtggtgga 165  Q
         ||||||||||| | ||||| ||||||| | ||||||||  ||||||||||||||||||||    
T  19839118 aaacttgtattttccaccaagattatttgaggcagatgttaccatacgttatgcaaggtggtgga 19839182  T

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Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 20015694 - 20015518
Alignment:
Q  1 tgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgatnn 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||  || |||||||||| | || || ||||  |||||||||      
T  20015694 tgcaatttggaatggatcaagatgttccaggtgatgtgcctagattcaatgagactaaaatcactgcttggaaatattattgtaggcttatatctgataa 20015595  T
Q  101 nnnnntgtattttccatcgagattgtttgagggaaatgttacctcacgttatgcaaggtggtggaagcaattggtat 177  Q
         ||||||||||| | ||| | ||||||| | ||||  || |||||||||||| |||||||||||||| |||||    
T  20015594 aaacttgtattttccaccaagactctttgaggcagatgtagccacacgttatgcaatgtggtggaagcaatcggtat 20015518  T

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Target: chr3; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 20033827 - 20033657
Alignment:
Q  1 tgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgatnn 100  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||| ||| |||||   | |||||||| | |||||||  ||||||| ||||||      
T  20033827 tgcaatttggaatggatcaagatgttccaagttatgtgcctaggttcaacgagactaaagagaatgcttggagaaactactgtcggcccatctctgatga 20033728  T
Q  101 nnnnntgtattttccatcgagattgtttgagggaaatgttacctcacgttatgcaaggtggtggaagcaat 171  Q
         ||||||||||| | ||||| ||||||| | |||||||| | ||||||||||  |||||||||||||    
T  20033727 aaatttgtattttccaccaagattatttgaggcagatgttaccacgcgttatgcaaactggtggaagcaat 20033657  T

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Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 26653773 - 26653949
Alignment:
Q  1 tgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgatnn 100  Q
    ||||||||||||| || ||||||||||||||| ||||| |||| ||||||||| |||||| |||||||||| || ||||||||||||| || ||| ||      
T  26653773 tgcaatttggaattgaccaagatgttccaagttatgtggctaggttcaatgagactaaatacattgcttgggaaaactactgcaggcctatttcttataa 26653872  T
Q  101 nnnnntgtattttccatcgagattgtttgagggaaatgttacctcacgttatgcaaggtggtggaagcaattggtat 177  Q
         ||||||||||| | || |||||||||| | |||| | |   |||||||||| ||||||||||||| ||||||    
T  26653873 aaatttgtattttccaccaaggttgtttgaggcagatgtcatcatgcgttatgcaaagtggtggaagcaactggtat 26653949  T

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Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 19812908 - 19813079
Alignment:
Q  1 tgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgatnn 100  Q
    ||||||||||||| |||||||||||||||||| |||||||||| |||||| |  |||||   ||||| |||||| |||||||||||| ||||||||||      
T  19812908 tgcaatttggaattgatcaagatgttccaagttatgtgcctaggttcaataaaactaaagtgattgcatggaaaaactactgcaggctcatatctgataa 19813007  T
Q  101 nnnnntgtattttccatcgagattgtttgagggaaatgttacctcacgttatgcaaggtggtggaagcaatt 172  Q
         ||||||||||| | ||| | ||||||| | |||||||| | | |||||  | |||||||||||||||    
T  19813008 aaaattgtattttccaccaagactttttgaggcagatgttaccacgcattatgtcaagtggtggaagcaatt 19813079  T

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Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 19951749 - 19951846
Alignment:
Q  1 tgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgat 98  Q
    ||||||||| |||||||||||||||||| ||| |||||||||| |||||| |  |||||   |||||||||||| |||||||||||||||||||||||    
T  19951749 tgcaatttgcaatggatcaagatgttccgagttatgtgcctaggttcaataaaactaaagtgattgcttggaaaaactactgcaggcccatatctgat 19951846  T

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Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 19849621 - 19849823
Alignment:
Q  1 tgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgatnn 100  Q
    ||||||| |||||||||||||||||||||||| ||||||| || || |||||  |||||  |||||||||| || |||| ||||| ||| |   ||||      
T  19849621 tgcaattcggaatggatcaagatgttccaagttatgtgccgaggttaaatgatactaaagacattgcttggcaaaactattgcagacccgtccatgataa 19849720  T
Q  101 nnnnntgtattttccatcgagattgtttgagggaaatgttacctcacgttatgcaaggtggtggaagcaattggtatctggcagcaacgattttgttaag 200  Q
         ||||||||||| ||||  | || ||||   ||||||||  ||||||||||| |||||||||||| | |||||  ||  |||| ||||||||||||    
T  19849721 acgtttgtattttccaccgaggcttttcgaggctgatgttaccgtacgttatgcaaagtggtggaagcactcggtattgggttgcaatgattttgttaag 19849820  T
Q  201 aaa 203  Q
    |||    
T  19849821 aaa 19849823  T

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Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 20036096 - 20035920
Alignment:
Q  1 tgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgatnn 100  Q
    ||||||||||||| |||||||||||||| ||| | ||| |||| | |||| |  |||||   |||||||||| | |||||||||||| ||||||||||      
T  20036096 tgcaatttggaattgatcaagatgttccgagttacgtggctaggtgcaataaaactaaagtgattgcttggagaaactactgcaggctcatatctgataa 20035997  T
Q  101 nnnnntgtattttccatcgagattgtttgagggaaatgttacctcacgttatgcaaggtggtggaagcaattggtat 177  Q
         ||||||||||| | ||| | ||||||| | |||||||| || ||||||  | || |||||||||||| ||||    
T  20035996 aaaattgtattttccaccaagactttttgaggcagatgttaccacatgttatgtcaagtagtggaagcaatttgtat 20035920  T

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Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 24839467 - 24839303
Alignment:
Q  1 tgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgatnn 100  Q
    ||||||| ||| | ||||||||||||||  || ||||| ||||| |||||||| ||||| |||||||||||||| | |||| ||| ||| ||||||||      
T  24839467 tgcaattcggatttgatcaagatgttcctggttatgtgtctagactcaatgagactaaagccattgcttggaaaaattactccagacccttatctgatac 24839368  T
Q  101 nnnnntgtattttccatcgagattgtttgagggaaatgttacctcacgttatgcaaggtggtgga 165  Q
         | ||||||||||| ||||  |||||||    | ||||||||||||| |||| ||||||||    
T  24839367 aagtttatattttccatctagatattttgaggctggtattacctcacgttacgcaaagtggtgga 24839303  T

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Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 20046809 - 20046915
Alignment:
Q  65 tgcttggaaacactactgcaggcccatatctgatnnnnnnntgtattttccatcgagattgtttgagggaaatgttacctcacgttatgcaaggtggtgg 164  Q
    |||||||||  |||||||||||||||| ||||||       ||||||||||| | ||||||||||||| | ||||||||   ||||||| || |||||||    
T  20046809 tgcttggaacaactactgcaggcccatgtctgataaaaatttgtattttccaccaagattgtttgaggcagatgttaccatgcgttatgtaaagtggtgg 20046908  T
Q  165 aagcaat 171  Q
    |||||||    
T  20046909 aagcaat 20046915  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 20007744 - 20007693
Alignment:
Q  22 atgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaa 73  Q
    ||||||||| | |||||||||| ||||||||| |||||| ||||||||||||    
T  20007744 atgttccaactaatgtgcctaggttcaatgagactaaattcattgcttggaa 20007693  T

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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 22655809 - 22655633
Alignment:
Q  1 tgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgatnn 100  Q
    ||||||||||||| ||||||||||||||  || ||||  |||| ||||||||| |||||| ||||||||||||| |||||||||| ||||||||||||      
T  22655809 tgcaatttggaattgatcaagatgttccgggttatgtagctaggttcaatgagactaaatacattgcttggaaaaactactgcagacccatatctgataa 22655710  T
Q  101 nnnnntgtattttccatcgagattgtttgagggaaatgttacctcacgttatgcaaggtggtggaagcaattggtat 177  Q
         ||||||||||| | ||||| ||||||  | |||||||| ||| |||||||||||||||||||||| ||||||    
T  22655709 aaacttgtattttccaccaagattatttgagatagatgttaccacacattatgcaaggtggtggaagcaactggtat 22655633  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 11544695 - 11544792
Alignment:
Q  1 tgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgat 98  Q
    |||||||||||||||||||||||||||||  |  |||||||||||||||||||  | || |||||||||||||| | |||||||| ||| ||||||||    
T  11544695 tgcaatttggaatggatcaagatgttccagcttgtgtgcctagattcaatgagaatgaaaccattgcttggaaaaattactgcagacccttatctgat 11544792  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 11563907 - 11563819
Alignment:
Q  10 gaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgat 98  Q
    ||||||||||||||||||||  |  |||||||||||||||||||  | || |||||||||||||| | |||||||| ||| ||||||||    
T  11563907 gaatggatcaagatgttccagcttgtgtgcctagattcaatgagaatgaaaccattgcttggaaaaattactgcagacccttatctgat 11563819  T

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Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 9815659 - 9815835
Alignment:
Q  1 tgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgatnn 100  Q
    ||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||  ||| ||||||||| |||| || ||||  |||||||||      
T  9815659 tgcaatttgaaatggatcaagatgttccaacttatgtgcctagattcaatgagactaaactcatggcttggaaaaactattgtaggcttatatctgatca 9815758  T
Q  101 nnnnntgtattttccatcgagattgtttgagggaaatgttacctcacgttatgcaaggtggtggaagcaattggtat 177  Q
         ||||||||||| | ||| | ||||||| | |||||||| |||| ||| ||| |||||||||||||| |||||    
T  9815759 aaatttgtattttccaccaagactttttgaggcagatgttaccacacgatatacaatgtggtggaagcaatcggtat 9815835  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 26354420 - 26354250
Alignment:
Q  1 tgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgatnn 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||| ||||||||||||| |||| || ||||  |||| ||||      
T  26354420 tgcaatttggaatggatcaagatgttccaagttatgtgcctagatttaatgagactaaattcattgcttggaaaaactattgtaggcttatatttgatac 26354321  T
Q  101 nnnnntgtattttccatcgagattgtttgagggaaatgttacctcacgttatgcaaggtggtggaagcaat 171  Q
         ||||||| ||| | ||| | | ||||| | |||| ||| |||||||||||| |||||||| |||||    
T  26354320 agatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaat 26354250  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 171
Target Start/End: Complemental strand, 38435079 - 38434912
Alignment:
Q  4 aatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctgatnnnnn 103  Q
    ||||| |||| |||||||||||||||||| |||||| ||| || |||||| ||||||| ||||||| |||| ||||| |||| | ||||| ||||         
T  38435079 aatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattgcttagaaaaactaccgcagtctcatatttgataaaaa 38434980  T
Q  104 nntgtattttccatcgagattgtttgagggaaatgttacctcacgttatgcaaggtggtggaagcaat 171  Q
      ||||||||||| | ||||| ||||||| | ||||||||   |||||||||||||||||||||||||    
T  38434979 tttgtattttccaccaagattatttgaggcagatgttaccaagcgttatgcaaggtggtggaagcaat 38434912  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 39191469 - 39191373
Alignment:
Q  1 tgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattgcttggaaacactactgcaggcccatatctga 97  Q
    |||||||||||||||||||||||||||||  |  ||||||||||||||||||| || || |||||||||||||| | |||||||| ||| |||||||    
T  39191469 tgcaatttggaatggatcaagatgttccagattgtgtgcctagattcaatgagactgaaaccattgcttggaaaaattactgcagacccttatctga 39191373  T

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