View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8792_high_14 (Length: 227)
Name: NF8792_high_14
Description: NF8792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8792_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 9415810 - 9415609
Alignment:
| Q |
1 |
ttaatgttgaaataccggggcagtattatggttccatcatttcattcccttcccaaattctcaaattatcagttctcttgtcatattaactttttctcta |
100 |
Q |
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| T |
9415810 |
ttaatgttgaaataccggggcagtattatggttccatcatttcattcccttcccaaattctcaaattatcagttctcttgtcatattaactttttctcta |
9415711 |
T |
|
| Q |
101 |
ttgcttcaagtcttcatttttggagaattcacttgtttttatttttctgtgtttattttggattatgatatgtgcatgtcatgctgtgttgccagtttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9415710 |
ttgcttcaagtcttcatttttggagaattcacttgtttttgtttttctgtgtttattttggattatgatatgtgcatgtcatgctgtgttgccagtttgt |
9415611 |
T |
|
| Q |
201 |
gc |
202 |
Q |
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|| |
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| T |
9415610 |
gc |
9415609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 9442723 - 9442926
Alignment:
| Q |
1 |
ttaatgttgaaataccggggcagtattatggtt-ccatcatttcattcccttcccaaattctcaaattatcagttctcttgtcatattaactttttctct |
99 |
Q |
| |
|
|||||||||||||| || |||||||||||| || |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
9442723 |
ttaatgttgaaatatcgaggcagtattatgctttccatcatttcattcccttcctaaattctcaaattttcagttctcttgtcattttaactttttctct |
9442822 |
T |
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| Q |
100 |
attgcttcaagtcttcattttt-ggagaattcacttgtttttatttttctgtgtttattttggattatgatatgtgcatgtcatgctgtgttgccagttt |
198 |
Q |
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|||||||||||| || |||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||| |
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| T |
9442823 |
attgcttcaagtttttatttttgggagaatttacttgtttttatttttctgtgtttgttttggattatgatatgtgcatgtcatgcagttttgccagttt |
9442922 |
T |
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| Q |
199 |
gtgc |
202 |
Q |
| |
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|||| |
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|
| T |
9442923 |
gtgc |
9442926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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