View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8792_low_11 (Length: 285)
Name: NF8792_low_11
Description: NF8792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8792_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 270
Target Start/End: Complemental strand, 35479892 - 35479641
Alignment:
| Q |
15 |
tggtgttgcgatctgaagttactggaaattgactacttcagcagttcactttctttgcattctctggtttttgaattttgatttcgattccagaatgatt |
114 |
Q |
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| T |
35479892 |
tggtgtcgcgatctgaagttactggaaattgactacttcagcaattcactttctttgcattctctggtttttgaattttgatttcgattccagaatgatt |
35479793 |
T |
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| Q |
115 |
ttgattcttctgagatgtgttctaaagggtaaattcggaattaaggaagaacgaatgtggggcgggtccaatttttgttcttgctggatttgagtaatta |
214 |
Q |
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| T |
35479792 |
ttgattcttctgagatgtgttctaaagggtaaattcggaattaaggaagaacgaatgt-----gggtccaatttttgctcttgctggatttgagtaatta |
35479698 |
T |
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| Q |
215 |
gatacatag-attatgtctttcctatctgcaccccacatttttcgctatgttttatg |
270 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35479697 |
gatacatagaattatgtctttgctatctgcaccccacatttttcgctatgttttatg |
35479641 |
T |
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