View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8792_low_13 (Length: 264)
Name: NF8792_low_13
Description: NF8792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8792_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 26 - 246
Target Start/End: Complemental strand, 19587188 - 19586977
Alignment:
| Q |
26 |
attgcatattagtactttaattaaaatagtatata--ctaatgaatgaaacactgcatgagttaatattctttgtaaccattttcatcccaataatgtaa |
123 |
Q |
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| T |
19587188 |
attgcatatgagtactttaattaaaatagtatatatactaattaatgaaacactgcatgagttaatattctttgtaaccaatttgatcccaataatgtaa |
19587089 |
T |
|
| Q |
124 |
atttcaagaactcatgcatggagattaattaaactttaactatcaccataatttcatttcaataacatgaaattaaattctcttcattaacattctgaaa |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||| ||||| |
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| T |
19587088 |
atttcaagaactcatgcatggagattaattaaactttaactatcacc-----------ttaataacatgaaattaaattctcttcattaagattatgaaa |
19587000 |
T |
|
| Q |
224 |
ttaatttaacttgatcaatatat |
246 |
Q |
| |
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|||||| |||||||||||||||| |
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| T |
19586999 |
ttaattaaacttgatcaatatat |
19586977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 41 - 246
Target Start/End: Original strand, 19582257 - 19582467
Alignment:
| Q |
41 |
tttaattaaaatagtatatactaatgaatgaaacactgcat---gagttaatattctttgtaaccattttcatcccaataatgtaaatttcaagaactca |
137 |
Q |
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|||||||||||||| ||| |||||||||||||||||| || ||||||||||||||||| |||| ||| |||||||||| ||||||||||| |||||| |
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| T |
19582257 |
tttaattaaaatagcata--ctaatgaatgaaacactgaataatgagttaatattctttgttaccaatttgatcccaataacgtaaatttcaataactca |
19582354 |
T |
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| Q |
138 |
tg----catggagattaattaaactttaactatcaccataatttcatttcaataacatgaaattaaattctcttcattaacattctgaaattaatttaac |
233 |
Q |
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| T |
19582355 |
tgcatgcatggagattaattaaactttaactatcaccttaatttcatttcaataacatgaaagtaaattctcttcattaagattctagaattaattaaac |
19582454 |
T |
|
| Q |
234 |
ttgatcaatatat |
246 |
Q |
| |
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||||||||||||| |
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| T |
19582455 |
ttgatcaatatat |
19582467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 41 - 246
Target Start/End: Complemental strand, 19591328 - 19591118
Alignment:
| Q |
41 |
tttaattaaaatagtatatactaatgaatgaaacactgcat---gagttaatattctttgtaaccattttcatcccaataatgtaaatttcaagaactca |
137 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||||| || ||||||||||||||||| |||| ||| |||||||||| ||||||||||| |||||| |
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| T |
19591328 |
tttaattaaaatagcata--ctaatgaatgaaacactgaataatgagttaatattctttgttaccaatttgatcccaataacgtaaatttcaataactca |
19591231 |
T |
|
| Q |
138 |
tgcatg----gagattaattaaactttaactatcaccataatttcatttcaataacatgaaattaaattctcttcattaacattctgaaattaatttaac |
233 |
Q |
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| T |
19591230 |
tgcatgcatggagattaattaaactttaactatcaccttaatttcatttcaataacatgaaagtaaattctcttcattaagattctagaattaattaaac |
19591131 |
T |
|
| Q |
234 |
ttgatcaatatat |
246 |
Q |
| |
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||||||||||||| |
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| T |
19591130 |
ttgatcaatatat |
19591118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 20789423 - 20789355
Alignment:
| Q |
59 |
tactaatgaatgaaacactgcatgagttaatattctttgtaaccattttcatcccaataatgtaaattt |
127 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||| |
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| T |
20789423 |
tactaataaatgaaacactgcatgagttaatattctttgtaaccaatttgatcccaataacgtaaattt |
20789355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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